{
name	"Dutch-K1"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"M73964"
descrip		"Feline immunodeficiency virus clone 19K1 envelope glycoprotein"
creator		"Siebelink,K.H.J., Chu,I.-H., Rimmelzwaan,G.F., Weijer,K.,"
offset		7338
creation-date	 3/11/92 17:34: 3
direction	1
strandedness	1
comments	"gene, complete cds.NID         g323944
KEYWORDS    envelope protein.
SOURCE      Feline immunodeficiency virus cDNA to genomic RNA.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 2571)
            Osterhaus,A.D.M. and Bosch,M.L.
  TITLE     Isolation and partial characterization of infectious molecular
            clones of feline immunodeficiency virus obtained directly from bone
            marrow DNA of a naturally infected cat
  JOURNAL   J. Virol. 66, 1091-1097 (1992)
  MEDLINE   92114131
FEATURES             Location/Qualifiers
     source          1..2571
                     /organism=`Feline immunodeficiency virus`
                     /proviral
     CDS             1..2571
                     /note=`putative`
                     /codon_start=1
                     /product=`envelope glycoprotein precursor`
                     /db_xref=`PID:g323945`
                     /translation=`MAEGFVANGQWIGPEEAEELLDFDIATQLNEEGPLNPGINPFRV
                     PGITQKEKQEYCNTLQPKLQALRNEIQEVKLEERNAGKFRRARFLRYSDETILSLIYS
                     FVGYFRYLVDRKKFGSLRHDIDIEAPQEEYYNNKEKGMTDNVKYGKRCLVGTAAFYLL
                     LAIGIIIIIRTVDAQVVWRLPPLVVPVEESEIIFWDCWAPEEPACQDFLGAMIHLKAS
                     TNIRIQEGPTLGNWAREIWATLFKKATRQCRRGRIWKRWNETITGPIGCANNTCYNIS
                     VIIPDYQCYIDRVDTWLQGKVNISICLTGGKMLYNKETKQLSYCTDPLQIPLINYTFG
                     PQQTCMWNTSQIQDPEIPKCGWWNQKAYYNQCSWEQTDVKFQCQRTQSQPGSWIRAIS
                     SWRQRNRWEWRPDFESERVKVSLQCNSTQNLTFAMRSSGDYGEITGAWIEFGCHRNKS
                     KHHNEARFRIRCRWNEGNNNSLIDTCGKTQNVLGANPVDCTMYANRMYNCSLQDGFTM
                     KVDDLIMHFNMTKAVEMYNIAGNWSCMSDLPTNWGYMKCNCTNDTSNNHTIKMECPEE
                     KGILRNWYNPVAGLRQSLEKYQVVKQPDYLVVPGEVMEYKPRRKRAAIHVMLALATVL
                     SMAGAGTGATAIGMVTQYHQVLATHQEAIEKVTEALKINNLRLVTLEHQVLVIGLKVE
                     AIEKFLYTAFAMQELGCNQNQFFCKVPLELWRRYNMTINQTIWNHGNITLGEWYNQTK
                     ALQHKFYEIIMDIEQNNVQGKKGLQQLQKWEDWVGWIGNIPQYLKGLLGGILGIGLGI
                     LLLILCLPTLVDCIRNCIHKILGYTVIAMPDVDEEEIQPQMELRRNGRQCGMSEKEEE
                     `
BASE COUNT     1000 a    344 c    558 g    669 t

g    669 t"
sequence	"
gaatcaaaaagcttattataaccaatgtagttgggaacagactgatgtaaagtttcagtg
tcaaagaacacagagtcagcctgggtcatggattagggcaatctcgtcgtggaggcaaag
gaatagatgggaatggagaccagattttgaaagtgaaagggtgaaagtatctctgcaatg
taatagcacacaaaatctaacctttgcaatgagaagttcaggagattatggcgaaataac
aggagcttggatagagtttggatgtcataggaataaatcaaaacatcataatgaagcaag
gtttagaattagatgtagatggaatgaagggaataataactcactcattgatacatgtgg
aaaaacacaaaatgttttaggtgcaaatcctgtagattgtaccatgtatgcaaatagaat
gtataactgttccttacaagatgggtttactatgaaggtagatgaccttattatgcattt
caatatgacaaaagctgtagaaatgtataac"
}
{
name	"DUTCH-UTR"
type		"DNA"
sequence-ID	"valis:44:801176168"
descrip		"DUTCH-UTR, 2580 bases, D0F checksum."
offset		7338
creation-date	 5/24/95 16:44:26
direction	1
strandedness	1
walk		"FALSE"
sequence	"
gaatcaacaagcttattataacaattgtaaatgggagcggactgatgtaaagtttcagtg
tcaaagaacacagagtcagcctgggtcatggattagggcaatctcgtcgtggaagcaagg
gaatagatgggaatggagaccagattttgaaagtgaaagggtgaaagtatcgctacaatg
taatagcacaagaaatctaacctttgcaatgagaagttcaggagattatggcgaaataac
gggagcttggatagagtttggatgtcataggaataaatcaatacgtcataatgcagcaag
gtttagaattagatgtagatggaatgaaggggataataactcactcattgatacatgtgg
agaaacgcaaaatgtttcaggtgcaaatcctgtagattgtaccatgtatgcaaataaaat
gtataattgttccttacaagatgggtttactatgaaggtagatgaccttattatgcattt
caatatgacaaaagctgtagaaatgtataac"
}
{
name	"Dutch6"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"X69499"
descrip		"Feline immunodeficiency virus (Dutch6) env sequence."
creator		"Rigby,M.A., Holmes,E.C., Pistello,M., Mackay,A., Brown,A.J. and"
offset		7338
creation-date	 5/ 7/96 17:36:48
direction	1
strandedness	1
comments	"NID         g59274KEYWORDS    env gene; surface glycoprotein; transmembrane protein.
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 672)
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-1992) M.A. Rigby, University of Glasgow, Dept
            Veterinary Pathology, Bearsden, Glasgow, G6I IQH, UK
REFERENCE   2  (bases 1 to 672)
            Neil,J.C.
  TITLE     Evolution of structural proteins of feline immunodeficiency virus:
            molecular epidemiology and evidence of selection for change
  JOURNAL   J. Gen. Virol. 74 (Pt 3), 425-436 (1993)
  MEDLINE   93187604
FEATURES             Location/Qualifiers
     source          1..672
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /isolate=`Dutch6`
                     /cell_line=`CRFK`
     CDS             <1..>672
                     /gene=`env`
                     /codon_start=1
                     /product=`surface glycoprotein`
                     /db_xref=`PID:g938170`
                     /translation=`ISQIQDPEIPKCGWWNQMAYYNSCRWEQTDVKFQCQRTHSQPGS
                     WIRTISSWRQRNRWEWRPDVKNERVKVSLQCNSTRNLTFAMRSSGDYGKITGAWIEFG
                     CHRNKSRLHNAARFRIRCRWNEGNNNSLIDTCGTTKNVSGANPVDCTMYANRMYNCSL
                     QDGFTIKIDDLIMHFNMTKAVEMYNIAGNWSCMSDLPTNWGYMNCNCTNSSSSPDKME
                     CPAKDG`
BASE COUNT      241 a     93 c    157 g    181 t"
sequence	"
gaatcaaatggcttattataacagttgtagatgggaacagactgatgtaaagtttcagtg
tcaaagaacacatagtcaacctgggtcatggattaggacaatctcatcgtggaggcaaag
gaatagatgggaatggagaccagatgttaaaaatgaaagggtgaaagtatctctacagtg
taatagcacaagaaatctaacttttgcaatgagaagttcaggagattatggcaaaataac
gggagcttggatagagtttggctgtcataggaataaatcaagactgcataatgcagcaag
gtttagaattagatgtagatggaatgaagggaataataactcgctcattgatacatgtgg
aaccacaaaaaatgtttcaggtgcaaatcctgtagattgtactatgtatgcaaatagaat
gtataactgttccttacaagatgggtttactataaagatagatgaccttattatgcattt
caatatgacaaaagctgtggaaatgtataac"
}
{
name	"USCAppr"
type		"DNA"
sequence-ID	"valis:33:801176129"
descrip		"USSCPPR, 512 bases, EB2 checksum."
offset		7338
creation-date	 5/24/95 16:44:26
direction	1
strandedness	1
comments	""
walk		"FALSE"
sequence	"
gaatcaaatagcctattataacagttgtagatgggaaagcacaaatgtaaagttttattg
tcaaagaacacagagtcagcctggaacatggattagaacaatctcatcatggagacaaaa
gaatagatgggaatggagaccagactttgaaagcgaaaaagttaaaatatcattacaatg
taatagtacacataatttaacttttgcaatgagaagttcaggagattatggagaagtaat
gggagcttggatagaatttggatgtcataggaacaaatcaagattccatactgaagcaag
gtttagaattagatgtagatggaatgtaggggataatacctcactcattgatacatgtgg
aaaaaatctaaatgtttcaggtgccaatcctgtagattgtaccatgtatgcaaataaaat
gtataactgttccttacaaaacgggtttactatgaaggtagatgaccttattatgcattt
caatatgacaaaagcagtagaaatgtataac"
}
{
name	"FranceWO"
type		"DNA"
sequence-ID	"valis:41:801176168"
descrip		"WO, 2580 bases, 145A checksum."
offset		7338
creation-date	 5/24/95 16:44:26
direction	1
strandedness	1
walk		"FALSE"
sequence	"
gaatcaaaacgcctattataatagttgtagatgggaacacacagatgtacagtttcaatg
tcaaaggacacaaagtcaaccaggatcatggattagagcaatctcgtcatggaaacaaag
gaatagatgggaatggagaccagactttgaaagtgaaaaagtaaaagtatctctacagtg
taatagcacaaaaaacctaacctttgcaatgagaagttcaggagattatggagaagtaac
aggagcttggatagagtttggatgtcataggacaaaatcaaaatatcatactgaagcaag
gtttagaattagatgtagatggaatgtaggggataatacctcactcattgatacatgtgg
ggaaactcaaaatgtttcaagagcaaatcctgtagattgtaccatgtatgcaaatagaat
gtataactgttccttacaaaacgggtttactatgaaggtagatgaccttatcatgcattt
taataagacaaaagctgtagagatgtataac"
}
{
name	"USCAsam_01A"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U02410"
descrip		"Feline immunodeficiency virus USCAsam_01A gp100 (env) gene, partial"
creator		"Sodora,D.L."
offset		7338
creation-date	 5/13/94 18:32:29
direction	1
strandedness	1
comments	"
cds.KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viridae; Viruses; Retroviridae; Lentivirus.
REFERENCE   1  (bases 1 to 675)
            Mullins,J.I.
  TITLE     Identification of three feline immunodeficiency virus (FIV) env
            gene subtypes and comparison of the FIV and human immunodeficiency
            virus type I evolutionary patterns
  JOURNAL   J. Virol. 68, 2230-2238 (1994)
  STANDARD  full automatic
REFERENCE   2  (bases 1 to 675)
  TITLE     Direct Submission
  JOURNAL   Submitted (05-OCT-1993) Donald L. Sodora, Department Microbiology
            and Immunology, Stanford University School of Medicine, Stanford,
            CA 94305-5402, USA
  STANDARD  full automatic
COMMENT     NCBI gi: 457981
FEATURES             Location/Qualifiers
     source          1..675
                     /strain=`USCAsam_01A`
                     /organism=`Feline immunodeficiency virus`
                     /specific_host=`Felis domesticus`
                     /proviral
     CDS             <1..>675
                     /gene=`env (V3-V5)`
                     /note=`NCBI gi: 457982`
                     /codon_start=1
                     /product=`gp100`
                     /translation=`TSQIQDPEIPKCGWWNQQAYYNSCKWEKTDVKFHCQRTQSQPGS
                     WRRVISSWRQRNRWEWRPDFESEKVKVSLQCNSTKNLTFAMRSSGDYGEVMGAWIEFG
                     CHRNKSKLHTEARFRIRCRWNEGDNASLIDTCGETQNVTGANPVDCTMYANEMYNCSL
                     QNGFTMKVDDLIMHFNMTKAVEMYNIAGNWSCTSDLPPTWGYMKCNCTNVKDNFTKKM
                     ECPSNQG`
BASE COUNT      249 a     91 c    154 g    181 t
g    181 t"
walk		"FALSE"
sequence	"
gaatcaacaagcttattataacagttgtaaatgggaaaaaacagatgtaaagtttcattg
tcaaagaacacagagtcagcctggatcatggcgtagagtaatctcgtcatggagacaaag
gaatagatgggaatggagaccagattttgaaagtgaaaaagtgaaagtatctctacagtg
taatagcacaaagaatttaacctttgcaatgagaagttcaggagattatggagaagtcat
gggagcttggatagagtttggatgtcataggaataaatcaaaacttcatactgaagcaag
gtttagaattagatgtagatggaacgaaggggataatgcctcactcattgatacatgcgg
agaaactcaaaatgttacaggtgcaaatcctgtagattgtaccatgtatgcaaatgaaat
gtataactgttccttacaaaatgggtttactatgaaggtagatgaccttattatgcattt
caatatgacaaaagctgtagaaatgtataat"
}
{
name	"WalesUK14"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"X69497"
descrip		"Feline immunodeficiency virus (UK14) env sequence."
creator		"Rigby,M.A., Holmes,E.C., Pistel"
offset		7338
creation-date	 8/24/93 18:31:11
direction	1
strandedness	1
comments	"
KEYWORDS    env gene; surface glycoprotein; transmembrane protein.SOURCE      Feline immunodeficiency virus.
            Viridae; ss-RNA enveloped viruses; Positive strand RNA viruses;
            Retroviridae; Lentivirinae.
REFERENCE   1  (bases 1 to 675)
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-1992) to the EMBL/GenBank/DDBJ databases. M.A.
            Rigby, University of Glasgow, Dept Veterinary Pathology, Bearsden,
            Glasgow, G6I IQH, UK
REFERENCE   2  (bases 1 to 675)
            Neil,J.C.
  TITLE     Evolution of structural proteins of feline immunodeficiency virus:
            molecular epidemiology and evidence of selection for change
  JOURNAL   J. Gen. Virol. 74  ( Pt 3), 425-436 (1993)
  MEDLINE   93187604
COMMENT
            NCBI gi: 59272
FEATURES               Location/Qualifiers
     source          1..675
                     /organism=&quot;Feline immunodeficiency virus&quot;
                     /proviral
                     /cell_line=&quot;F422&quot;
                     /isolate=&quot;UK14&quot;
     CDS             &lt;1..&gt;675
                     /gene=&quot;env&quot;
                     /product=&quot;surface glycoprotein&quot;
BASE COUNT      241 a     98 c    158 g    178 t"
walk		"FALSE"
sequence	"
gaatcaaagggcctattataacagttgtagatgggaaagcacagatgtaaagtttcattg
tcaaagaaaacagagtcagcctggatcatggagtagagcaatctcgtcatggaaacaaag
gaatagatgggaatggagaccagattttgaaagtgaaaaagtgaaagtatctctacagtg
taatagcacaaaaaacctaacctttgcaatgagaagttcaggagattatggagaagtaac
gggagcttggatagagtttggatgtcataggaataaatcaaaacttcatagtgaagccag
gtttagaattagatgtagatggaatgtaggagataatacctcactcattgatacatgtgg
agaaactcaaaatgtttctgatgcacatcctgtagattgtactatgtatgcaaataaaat
gtataactgttccttacaaaacgggtttactatgaaggtagatgaccttcttatgcattt
caatatgacaaaagctgtagaaatgtataac"
}
{
name	"EnglandUK8"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"X69496"
descrip		"Feline immunodeficiency virus (UK8) env sequence."
creator		"Rigby,M.A."
offset		7338
creation-date	 5/20/96 17:34:54
direction	1
strandedness	1
comments	"NID         g397348KEYWORDS    env gene; surface glycoprotein; transmembrane protein.
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 2568)
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-1992) M.A. Rigby, University of Glasgow, Dept
            Veterinary Pathology, Bearsden, Glasgow, G6I IQH, UK
  REMARK    revised by [3]
REFERENCE   2  (bases 1 to 2568)
            Neil,J.C.
  TITLE     Evolution of structural proteins of feline immunodeficiency virus:
            molecular epidemiology and evidence of selection for change
  JOURNAL   J. Gen. Virol. 74 (Pt 3), 425-436 (1993)
  MEDLINE   93187604
REFERENCE   3  (bases 1 to 2568)
  TITLE     Direct Submission
  JOURNAL   Submitted (24-AUG-1993) M.A. Rigby, University of Glasgow, Dept
            Veterinary Pathology, Bearsden, Glasgow, G6I IQH, UK
FEATURES             Location/Qualifiers
     source          1..2568
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /isolate=`UK8`
                     /cell_line=`F422`
     CDS             85..2568
                     /gene=`env`
                     /codon_start=1
                     /product=`surface glycoprotein`
                     /db_xref=`PID:g59271`
                     /db_xref=`SWISS-PROT:Q04995`
                     /translation=`MNEEGPLNPGINPFRVPGITETEKQDYCNMLQPKLQALRNEIQE
                     VKLEEGNAGKFRRARFLRYSDETILSLIHLFIGYCTYLLNRKELGSLRHDIDIEAPQE
                     ECYSSREQSITDNIKYGKRCFIGTAGLYLLLFIGVGIYLGTAKAQVVWRLPPLVVPVE
                     ESEIIFWDCWAPEEPACQDFLGAMIHLKASTNISIQEGPTLGNWAKEIWGTLFKKATR
                     QCRRGRIWKRWNETISGPLGCANNTCYNISVIVPDYQCYLDRVDTWLQGKVNVSLCLT
                     GGKILYNKYTKQLSYCTDPLQIPLISYTFGPNQTCMWDTSQIQDPEIPKCGWWNQIAY
                     YNSCRWESTDVKFHCQRTQSQPGLWLRAISSWKQRNRWEWRPDFESEKAKVSLQCNST
                     KNLTFAMRSSGDYGEVTGAWIEFGCHRNKSKLHTEARFRIRCRWNVGDNTSLIDTCGE
                     TQNVSGANPVDCTMYANRMYNCSLQNGFTMKVDDLIMHFNMTKAVEMYDIAGNWSCTS
                     DLPPTWGYMNCNCTNSSSTNSVKMACPKNQGILRNWYNPVAGLRQSLEKYQVVKQPDY
                     LVVPGEVMEYKPRRKRAAIHVMLALATVLSMAGAGTGATAIGMVTQYHQVLATHQETI
                     EKVTEALKINNLRLVTLEHQVLVIGLKVEAMEKFLYTAFAMQELGCNQNQFFCKVPPE
                     LWKRYNMTINQTIWNHGNITLGEWYNQTKELQQKFYEIIMNIEQNNVQVKKGLQQLQE
                     WEDWVGWIGNIPQYLKGLLGGILGIGIGVLLLILCLPTLVDCIRNCISKVLGYTVIAM
                     PEIGDEEETVQMELRKNGRQCGMSEKEEE`
BASE COUNT      973 a    345 c    572 g    678 t"
sequence	"
gaatcaaatagcctattataacagttgtagatgggaaagcacagatgtaaagtttcattg
tcagagaacacagagtcagcctggattatggcttagagcaatttcgtcatggaaacaaag
gaatagatgggaatggagaccagattttgaaagtgaaaaagcgaaagtatctctacagtg
taatagcacaaaaaacctaacctttgcaatgagaagttcaggagattatggagaagtaac
gggagcttggatagagtttggatgtcataggaataaatcaaaacttcatactgaagcaag
gtttaggattagatgtagatggaatgtaggggataatacctccctcattgatacatgtgg
agaaactcaaaatgtgtcaggtgcaaatcctgtagattgtactatgtatgcaaatagaat
gtataattgttccttacaaaacgggtttactatgaaggtagatgaccttattatgcattt
caatatgacaaaagctgtagaaatgtatgac"
}
{
name	"Sendai1"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"D37813"
descrip		"Feline immunodeficiency virus gene for envelope polyprotein."
creator		"Kakinuma,S., Motokawa,K., Hohda"
offset		7338
creation-date	 7/25/95  9:32:28
direction	1
strandedness	1
comments	"
(FIV-5).NID         g840674
KEYWORDS    .
SOURCE      Feline immunodeficiency virus (individual_isolate Sendai 1, ) RNA.
            Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
            Retroviridae; Lentivirinae.
REFERENCE   1  (bases 1 to 2562)
  JOURNAL   Unpublished (1995)
REFERENCE   2  (sites)
            Hashimoto,H.
  TITLE     Nucleotide sequence of feline immunodeficiency virus:
            classification of Japanese isolates into two subtypes which are
            distinct from non-Japanese subtypes
  JOURNAL   J. Virol. 69 (6), 3639-3646 (1995)
  MEDLINE   95264455
COMMENT     Submitted (01-Aug-1994) to DDBJ by:
            Shizuko Kakinuma
            Department of Immunology
            Center for Basic Research
            The Kitasato Institute
            5-9-1 Shirokane, Minato-ku
            Tokyo 108
            Japan
            Phone: 03-3444-6161 x2109
            Email: skakinum@ddbj.nig.ac.jp
            Fax:   03-3444-6637.
            NCBI gi: 840674
FEATURES             Location/Qualifiers
     source          1..2562
                     /organism=`Feline immunodeficiency virus`
                     /isolate=`Sendai 1`
                     /proviral
                     /sequenced_mol=`RNA`
     CDS             1..2562
                     /gene=`env`
                     /note=`NCBI gi: 840675`
                     /codon_start=1
                     /product=`envelope polyprotein`
                     /db_xref=`PID:g840675`
                     /translation=`MAEGFAANRQWIGPEEAEELLDFDIATQMNEEGPLNPGINPFRV
                     PGITEIEKQAYCKILQPRLQALRNEIQEVKLEEGNAGKFRRARFLRYSDVAILSLIHV
                     FIGYCTYLCNQQKLGSLRHDIDIEAPQEEYYSNNEKGTTDNIKYGRRCVIGTVALYLL
                     ICTGIIIYTRTATAQVVWRLPPLVVPVEESEVIFWDCWAPEEPACQDFLGAMIHLKAS
                     TNISIQEGPTLGNWAREIWGTLFKKATRQCRRGRIWRRWNETITGPLGCANNTCYNIS
                     VIVPDYQCYLDRVDTWLQGKINISLCLTGGKMLYNRYTKQLSYCTDPLQIPLINYTFG
                     PNQTCMWNTSQIQDPEIPKCGWWNQRAYYNSCRWESTDVKFHCQRTQSQPGSWLRAIS
                     SWRQRNRWEWRPDFESEKVKVSLQCNSTKNLTFAMRSSGDYGDVTGAWIEFGCHRNKS
                     RLHTEARFRIRCRWNVGDNTSLIDTCGKTQNIAGANPVDCTMYVNRMYNCSLQNGFTM
                     KVDDLIMHFNMTKAVEMYNIAGNWSCTSNLPPTWGYINCNCTNSSDSNKMACPSSQGI
                     LRNWYNPVAGLRQSLEKYQVVKQPDYLVVPGEVMEYKPRRKRAAIHVMLALATILSMA
                     GAGTGATAIGMVTQYHQVLATHQEAIEKVTEALKVNNLRLITLEHQVLVIGLKVEAME
                     KFLYTAFAMQELGCNQNQFFCKVPPELWKRYNMTINQTIWNHGNITLGEWYNQTKGLQ
                     QKFYEIIMDIEQNSVQGKKGIQQLQEWEDWIGWIGNIPQYLKGLLGGILGIGLGVLLL
                     ILCLPTLVDCIRNCIHKILGYTVIAMPEVEGEEIQPQMELRRNGRQCGMSEKEEE`
BASE COUNT      972 a    365 c    571 g    654 t"
walk		"FALSE"
sequence	"
gaatcaaagagcctattataacagttgtagatgggaaagcacagatgtaaagtttcattg
tcaaagaacacaaagtcagcctggatcatggcttagagcaatctcgtcatggagacaaag
gaatagatgggaatggagaccagattttgaaagtgaaaaggtgaaagtatctctacagtg
taatagtacaaaaaacctaacctttgcaatgagaagttcaggagactatggagatgtaac
gggagcttggatagagtttggatgtcatagaaataaatcaagacttcatactgaagcaag
gtttagaattagatgtagatggaatgtaggggataatacctcactcattgatacatgtgg
aaaaactcaaaatattgcaggtgcaaatcctgtagattgtaccatgtatgtaaatagaat
gtataactgctccttacaaaacgggtttactatgaaggtagatgaccttattatgcattt
caatatgacaaaagctgtagaaatgtataac"
}
{
name	"SWISS-Z2"
type		"DNA"
sequence-ID	"valis:43:801176168"
descrip		"SWISS-Z2, 2580 bases, 1CE9 checksum."
offset		7338
creation-date	 5/24/95 16:44:26
direction	1
strandedness	1
comments	""
walk		"FALSE"
sequence	"
gaatcaagcagcctattataacagttgtagatgggaaagcactgatgtaaagtttcattg
tcaaagaacacagagtctgcctggaacatggcttagaacaatctcatcatggagaccaaa
gaatagatgggaatggagaccagattttgaaagtgaaaaagtgaaagtatctctacagtg
taatagcacaaacaacctaacctttgcaatgagaagttcaggagattatggagaggtaac
gggagcatggatagaatttggatgtcataggaaaaaatcaaaacttcattctgaagcaag
gtttagaatcagatgtagatgggataaaggggataatacctcactcattgatacatgtgg
aaaaactcaaaatgttttaggtgcaaatcctgtagattgcaccatgtatgcaaatagaat
gtataattgttccttacaaaatgggtttactatgaagatagatgaccttgttatgcattt
caatatgacgaaagctgtagaaatgtataac"
}
{
name	"ScotUK2"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"X69494"
descrip		"Feline immunodeficiency virus (UK2) env sequence."
creator		"Rigby,M.A., Holmes,E.C., Pistello,M., Mackay,A., Brown,A.J. and"
offset		7338
creation-date	 5/ 7/96 17:34:39
direction	1
strandedness	1
comments	"NID         g59267KEYWORDS    env gene; surface glycoprotein; transmembrane protein.
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 2568)
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-1992) M.A. Rigby, University of Glasgow, Dept
            Veterinary Pathology, Bearsden, Glasgow, G6I IQH, UK
REFERENCE   2  (bases 1 to 2568)
            Neil,J.C.
  TITLE     Evolution of structural proteins of feline immunodeficiency virus:
            molecular epidemiology and evidence of selection for change
  JOURNAL   J. Gen. Virol. 74 (Pt 3), 425-436 (1993)
  MEDLINE   93187604
FEATURES             Location/Qualifiers
     source          1..2568
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /isolate=`UK2`
                     /cell_line=`F422`
     CDS             1..2568
                     /gene=`env`
                     /codon_start=1
                     /product=`surface glycoprotein`
                     /db_xref=`PID:g59268`
                     /db_xref=`SWISS-PROT:Q04993`
                     /translation=`MAEGFAVNRQWIGPEEAEELLDFDIATQMNEEGPLNPGINLFRV
                     PGITETEKQEYCNILQPKLQDLRNEIQEVKLEEGNAGKFRRARFLRYSDETILSLIHL
                     FIGYCTYLCKRNKLGTLVHNIDIEAPQEECYSNRERGTTVNIKYSRRCCIGTTALYLL
                     LLTGIIIYTQTTQAQVVWRLPPLVVPVEESEIIFWDCWAPEEPACQDFLGAMIYLKAS
                     TNISIQEGPTLGNWAREIWGTLFKKATRQCRRGRIWRRWNETITGPSGCANNTCYNIS
                     VIVPDYQCYLDRVDTWLQGKVNISLCLTGGKMLYNKDTKQLSYCTDPLQIPLINYTFG
                     PNQTCMWNTSQIQDSDIPKCGWWNQIAYYNSCRWEQTDVKFHCQRTQSQPGTWLRTIS
                     SWKQKNRWEWRPDFESEKVRVSLQCNTTKNLTFAMRSSGDYGEVTGAWIEFGCHRNKS
                     KLHSDARFRIRCRWNVGDNTSLIDTCGNDPNVSGANPVDCTMYANRMYNCSLQNGFTM
                     KVDDLIMHFNMTKAVEMYNIAGNWSCTSDLPSTWGYMNCNCTNSSSTDSNKMACPKRQ
                     GILRNWYNPVAGLRQSLEKYQVVKQPDYLVVPREVMEYKPRRKRAAIHVMLALATVLS
                     MAGAGTGATAIGMVTQYHQVLATHQETIEKITEALKVNNLRLVTLEHQVLVIGLKVEA
                     IEKFLYTAFAMQELGCNQNQFFCKVPPELWQRYNMTINQTIWNHGNITLGEWYNQTKD
                     LQQKFYEIIMDMEQNNVQGRKGLQQLQEWEDWVGWLGNIPRYLKGLLGGILGIGLGVL
                     LLILCLPTLVDCIRNCISKVLGYTVIAMPEVEEEEIQPPMELRRNGRQCDMSEKEEE`
BASE COUNT      984 a    356 c    562 g    666 t"
sequence	"
gaatcaaatagcctattataacagttgtaggtgggaacaaacagatgtaaagtttcattg
tcaaagaacacagagtcagcctggaacatggcttagaacaatctcgtcatggaaacaaaa
gaatagatgggaatggagaccagattttgaaagtgaaaaagtgagagtatctctacagtg
taataccacaaaaaacctaacctttgcaatgagaagttcaggagattatggagaagtaac
gggagcttggatagagtttggatgtcataggaacaaatcaaaactccattcagatgcaag
gtttagaattagatgtagatggaatgtaggggataatacatcactcattgatacatgtgg
aaatgatccaaatgtctcaggtgcaaatcctgtagattgtaccatgtatgcaaatagaat
gtataactgttccttacaaaatgggtttactatgaaggtagatgatcttattatgcattt
caatatgacaaaagctgtagaaatgtataac"
}
{
name	"Dutch4"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"X69498"
descrip		"Feline immunodeficiency virus (Dutch4) env sequence."
creator		"Rigby,M.A., Holmes,E.C., Pistello,M., Mackay,A., Brown,A.J. and"
offset		7338
creation-date	 5/ 7/96 17:36:31
direction	1
strandedness	1
comments	"NID         g59273KEYWORDS    env gene; surface glycoprotein; transmembrane protein.
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 678)
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-1992) M.A. Rigby, University of Glasgow, Dept
            Veterinary Pathology, Bearsden, Glasgow, G6I IQH, UK
REFERENCE   2  (bases 1 to 678)
            Neil,J.C.
  TITLE     Evolution of structural proteins of feline immunodeficiency virus:
            molecular epidemiology and evidence of selection for change
  JOURNAL   J. Gen. Virol. 74 (Pt 3), 425-436 (1993)
  MEDLINE   93187604
FEATURES             Location/Qualifiers
     source          1..678
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /isolate=`Dutch4`
                     /cell_line=`CRFK`
     CDS             <1..>678
                     /gene=`env`
                     /codon_start=1
                     /product=`surface glycoprotein`
                     /db_xref=`PID:g938169`
                     /translation=`TSQIQDPEIPKCGWWNQIAYYNSCRWEKTDVKFHCQRTQSQPGS
                     WHRAISSWRQRNRWEWRPDFESEKVKVSLQCNSTENLTFAMRSSGDYGEVVGAWIEFG
                     CHRNKSKMHSAARFRIRCRWNVGENTSLIDTCGETQNVSGAKPVDCTMYANKMYNCSL
                     QSGFTMKVDDLIVHFNMTKAVEMYNIAGNWSCTSDLPQEWGYMNCNCTNGTESNNSNK
                     MACPRNQG`
BASE COUNT      247 a     93 c    163 g    175 t"
sequence	"
gaatcaaatagcctattataacagttgtagatgggaaaagacggatgtaaagtttcattg
tcaaagaacacagagtcagcctggatcatggcatagagcaatctcatcatggagacaaag
gaatagatgggaatggagaccagattttgaaagtgaaaaagtaaaggtatctctacagtg
taatagcacagaaaacctaacctttgcaatgagaagttcaggagattatggagaagtagt
gggagcttggatagagtttgggtgtcataggaataaatcaaaaatgcattctgcagcaag
gtttagaattagatgtagatggaatgtaggggagaatacctcactcattgatacatgtgg
agaaactcaaaatgtttcaggggccaaacctgtagattgtaccatgtatgcaaacaaaat
gtataactgttccttacaaagtgggtttactatgaaggtagatgaccttattgtgcattt
caatatgacaaaagctgtagaaatgtataac"
}
{
name	"USCAtt_10A"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U02414"
descrip		"Feline immunodeficiency virus USCAtt_10A gp100 (env) gene, partial"
creator		"Sodora,D.L."
offset		7338
creation-date	 5/13/94 18:32:53
direction	1
strandedness	1
comments	"
cds.KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viridae; Viruses; Retroviridae; Lentivirus.
REFERENCE   1  (bases 1 to 678)
            Mullins,J.I.
  TITLE     Identification of three feline immunodeficiency virus (FIV) env
            gene subtypes and comparison of the FIV and human immunodeficiency
            virus type I evolutionary patterns
  JOURNAL   J. Virol. 68, 2230-2238 (1994)
  STANDARD  full automatic
REFERENCE   2  (bases 1 to 678)
  TITLE     Direct Submission
  JOURNAL   Submitted (05-OCT-1993) Donald L. Sodora, Department Microbiology
            and Immunology, Stanford University School of Medicine, Stanford,
            CA 94305-5402, USA
  STANDARD  full automatic
COMMENT     NCBI gi: 457989
FEATURES             Location/Qualifiers
     source          1..678
                     /strain=`USCAtt_10A`
                     /organism=`Feline immunodeficiency virus`
                     /specific_host=`Felis domesticus`
                     /proviral
     CDS             <1..>678
                     /gene=`env (V3-V5)`
                     /note=`NCBI gi: 457990`
                     /codon_start=1
                     /product=`gp100`
                     /translation=`TSQIQDPEISKCGWWNQRAYYNSCKWEQTDVKFHCQRTQSQPGS
                     WRRTISSWRQGNRWEWRPDFESEKVKVSLQCNSTKNLTFAMRSSGDYGEVTGAWIEFG
                     CHRNKSQHHTEARFRIRCRWNKGKNASLIDTCGETQNVSGAHPVDCTMYANKMYNCSL
                     QNGFTMKVDDLIMHFNMTKAVEMYNIAGNWSCTSDLPPTWGYMNCNCTNGTSGISGTK
                     MACPSKQG`
BASE COUNT      248 a     97 c    157 g    176 t
g    176 t"
walk		"FALSE"
sequence	"
gaatcaaagagcctattataacagttgtaaatgggaacaaacagatgtaaagtttcattg
tcaaagaacacagagtcaacctggatcatggcgtagaacaatctcgtcatggagacaagg
gaatagatgggaatggagaccagattttgaaagtgaaaaggtgaaggtatctctacaatg
taatagcacaaaaaacctaacatttgcaatgagaagttcaggagattatggagaagtaac
gggagcttggatagagtttggatgtcatagaaataaatcacaacatcatactgaagcaag
gtttagaattagatgtagatggaataaagggaagaatgcctcactcattgatacatgtgg
agaaactcaaaatgtttcaggtgcacatcctgtagattgtaccatgtatgcaaataaaat
gtacaattgttctctacaaaacgggtttactatgaaggttgatgaccttattatgcattt
caatatgacaaaagctgtagaaatgtataat"
}
{
name	"USCAlemy01A"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U02404"
descrip		"Feline immunodeficiency virus USCAlemy01A (env) gene, partial cds."
creator		"Sodora,D.L."
offset		7338
creation-date	 5/25/94 11:47:13
direction	1
strandedness	1
comments	"NID         g457969KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viridae; Viruses; Retroviridae; Lentivirus.
REFERENCE   1  (bases 1 to 678)
            Mullins,J.I.
  TITLE     Identification of three feline immunodeficiency virus (FIV) env
            gene subtypes and comparison of the FIV and human immunodeficiency
            virus type I evolutionary patterns
  JOURNAL   J. Virol. 68, 2230-2238 (1994)
  MEDLINE   94187063
REFERENCE   2  (bases 1 to 678)
  TITLE     Direct Submission
  JOURNAL   Submitted (05-OCT-1993) Donald L. Sodora, Department Microbiology
            and Immunology, Stanford University School of Medicine, Stanford,
            CA 94305-5402, USA
COMMENT
            NCBI gi: 457969
FEATURES               Location/Qualifiers
     source          1..678
                     /strain=`USCAlemy01A`
                     /organism=`Feline immunodeficiency virus`
                     /specific_host=`Felis domesticus`
                     /proviral
     CDS             <1..>678
                     /gene=`env`
                     /note=`V3-V5;  NCBI gi: 457970`
                     /codon_start=1
                     /product=`gp100`
                     /db_xref=`PID:g457970`
                     /translation=`TSQIQDPEISKCGWWNQIAYYNSCKWEQTDVKFHCQRTQSQPGS
                     WRRTISSWRQGNRWEWRPDFESEKVKVSLQCNSTKNLTFAMRSSGDYGEVTGAWIEFG
                     CHRNKSRLHTEARFRIRCRWNKGKNASLIDTCGETQNVSGAHPVDCTMYANKMYNCSL
                     QNGFTMKVDDLIMHFNMTKAVEMYNIAGNWSCTSDLPPTWGYMNCNCTNRTNPDGTAK
                     MACPSKQG`
BASE COUNT      248 a    100 c    153 g    177 t"
sequence	"
gaatcaaatagcctattataacagttgtaaatgggaacaaacagatgtaaagtttcattg
tcaaagaacacagagtcaacctggatcatggcgtagaacaatctcgtcatggagacaagg
gaatagatgggaatggagaccagattttgaaagtgaaaaggtgaaggtatctctacaatg
taatagcacaaaaaacctaacatttgcaatgagaagttcaggagattatggagaagtaac
gggagcttggatagagtttggatgtcatagaaataaatcacgacttcatactgaagcaag
gtttagaattagatgtagatggaataaagggaagaatgcctcactcattgatacatgtgg
agaaactcaaaatgtttcaggtgcacatcctgtagattgtaccatgtatgcaaataaaat
gtacaattgttctctacaaaacgggtttactatgaaggtagatgaccttattatgcattt
caatatgacaaaagctgtagaaatgtataat"
}
{
name	"USCAzepy01A"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U02417"
descrip		"Feline immunodeficiency virus USCAzepy01A gp100 (env) gene, partial"
creator		"Sodora,D.L."
offset		7338
creation-date	 5/13/94 18:33: 4
direction	1
strandedness	1
comments	"
cds.KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viridae; Viruses; Retroviridae; Lentivirus.
REFERENCE   1  (bases 1 to 672)
            Mullins,J.I.
  TITLE     Identification of three feline immunodeficiency virus (FIV) env
            gene subtypes and comparison of the FIV and human immunodeficiency
            virus type I evolutionary patterns
  JOURNAL   J. Virol. 68, 2230-2238 (1994)
  STANDARD  full automatic
REFERENCE   2  (bases 1 to 672)
  TITLE     Direct Submission
  JOURNAL   Submitted (05-OCT-1993) Donald L. Sodora, Department Microbiology
            and Immunology, Stanford University School of Medicine, Stanford,
            CA 94305-5402, USA
  STANDARD  full automatic
COMMENT     NCBI gi: 457995
FEATURES             Location/Qualifiers
     source          1..672
                     /strain=`USCAzepy01A`
                     /organism=`Feline immunodeficiency virus`
                     /specific_host=`Felis domesticus`
                     /proviral
     CDS             <1..>672
                     /gene=`env (V3-V5)`
                     /note=`NCBI gi: 457996`
                     /codon_start=1
                     /product=`gp100`
                     /translation=`TSQIQDPEIPKCGWWNQIAYYTSCKWEKTDVKFHCQRTQSQPGS
                     WLRTISSWRQRNRWEWRPDFESEKVKVSLKCNSTKNLTFAMRSSGDYGEVTGAWIEFG
                     CHRNKSKLHTEARFRIRCRWNVGNNASLIDTCGNTRNISGANPVDCTMYANKMYNCSL
                     QNGFTMKVDDLIMHFNMTKAVEMYNIAGNWSCTSDLPPTWGYMNCNCTNNSNDSNKMA
                     CPSNQG`
BASE COUNT      251 a     94 c    146 g    181 t
g    181 t"
walk		"FALSE"
sequence	"
gaatcaaatagcctattataccagttgtaaatgggaaaaaacagatgtaaagtttcattg
tcaaagaacacagagtcagcctggatcgtggcttagaacaatctcgtcatggagacaaag
gaatagatgggaatggagaccagattttgaaagtgaaaaagtgaaagtatctctaaagtg
taatagcacaaaaaacctaacctttgcaatgagaagttcaggagattatggagaagtaac
gggagcttggatagagtttggatgtcatagaaataaatcaaaacttcatactgaagcaag
gtttagaattagatgtagatggaatgtagggaataatgcctcactcattgatacatgtgg
aaatactcgaaatatttcaggtgcaaatcctgtagattgtaccatgtatgcaaacaaaat
gtacaattgttccttacaaaacgggtttactatgaaggtagatgaccttattatgcattt
caatatgacaaaagctgtagaaatgtataat"
}
{
name	"USCAhnky11A"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U02402"
descrip		"Feline immunodeficiency virus USCAhnky11A gp100 (env) gene, partial"
creator		"Sodora,D.L."
offset		7338
creation-date	 5/25/94 18:31:54
direction	1
strandedness	1
comments	"
cds.KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viridae; Viruses; Retroviridae; Lentivirus.
REFERENCE   1  (bases 1 to 675)
            Mullins,J.I.
  TITLE     Identification of three feline immunodeficiency virus (FIV) env
            gene subtypes and comparison of the FIV and human immunodeficiency
            virus type I evolutionary patterns
  JOURNAL   J. Virol. 68, 2230-2238 (1994)
  STANDARD  full automatic
REFERENCE   2  (bases 1 to 675)
  TITLE     Direct Submission
  JOURNAL   Submitted (05-OCT-1993) Donald L. Sodora, Department Microbiology
            and Immunology, Stanford University School of Medicine, Stanford,
            CA 94305-5402, USA
  STANDARD  full automatic
COMMENT     NCBI gi: 457965
FEATURES             Location/Qualifiers
     source          1..675
                     /strain=`USCAhnky11A`
                     /organism=`Feline immunodeficiency virus`
                     /specific_host=`Felis domesticus`
                     /proviral
     CDS             <1..>675
                     /gene=`env`
                     /note=`V3-V5;  NCBI gi: 457966`
                     /codon_start=1
                     /product=`gp100`
                     /translation=`TSQIQDPEIPKCGWWNQIAYYNSCKWERTEVKFHCQRTQSQPGS
                     WLRAISSWRQRNRWEWRPDFESEKVKVSLKCNSTKNLTFAMRSSGDYGELTGAWIEFG
                     CHRNKSKLHTEARFRIRCRWNVGNNASLIDTCGNTQNVSGANPVDCTMYANKMYNCSL
                     QNGFTMKVDDLIMHFNMTKAVEMYNIAGNWSCTSDLPPTWGYMNCNCTNSTNNPTGKM
                     ACPSNQG`
BASE COUNT      248 a     97 c    148 g    182 t
g    182 t"
walk		"FALSE"
sequence	"
gaatcaaatagcctattataacagttgtaaatgggaacgaacagaggtaaagtttcattg
tcaaagaacacagagtcagcctggatcgtggcttagagcaatctcgtcatggagacaaag
gaatagatgggaatggagaccagattttgaaagtgaaaaggtgaaagtatctctaaagtg
taatagcacaaaaaatctaacctttgcaatgagaagttcaggagattatggagaattaac
gggagcttggatagagtttggatgtcatagaaataaatcaaaacttcatactgaagcaag
gtttagaattagatgtagatggaatgtagggaataatgcctcactcattgatacatgtgg
aaatactcaaaatgtttcaggtgcaaatcctgtagattgtaccatgtatgcaaataaaat
gtacaattgttccttacaaaacggatttactatgaaggtagatgaccttattatgcattt
caatatgacaaaagctgtagaaatgtataat"
}
{
name	"CA.DIXON"
type		"DNA"
sequence-ID	"valis:40:801176168"
descrip		"DIXON, 2580 bases, 1883 checksum."
offset		7338
creation-date	 5/24/95 16:44:26
direction	1
strandedness	1
walk		"FALSE"
sequence	"
gaatcaaatagcctattataacagttgtaaatgggaaaaaacagatgtaaagtttcattg
tcaaagaacacagagtcagcctggatcatggattagagcaatctcgtcatggagacaaag
gaatagatgggaatggagaccagattttgaaagtgaaaaggtgaaagtatctctacagtg
taatagcacaaaaaatttaacctttgcaatgagaagttcaggagattatggagaagtaac
gggagcttggatagagtttggatgtcatagaaagaaatcaaaacttcatactgaagcaag
gtttagaattagatgtagatggaatgtagggaataatgcctcactcattgatacatgtgg
aaatactccagatgtttcaggtgcaaatcctgtaaattgtaccatgtatgcaaataaaat
gtacaattgttggttacaaaacgggtttactataaaggtagatgaccttattatgcattt
caatatgacaaaagctgtagaaatgtataat"
}
{
name	"SwissZ1"
type		"DNA"
sequence-ID	"valis:45:801176168"
descrip		"Z1, 2580 bases, 67A checksum."
offset		7338
creation-date	 5/24/95 16:44:26
direction	1
strandedness	1
comments	""
walk		"FALSE"
sequence	"
gaatcaaatggcctattataacagatgtaaatgggaagaggcaaaggtaaagtttcattg
tcaaagaacacagagtcagcctggatcatggcgtagagcaatctcgtcatggaaacaaag
aaatagatgggagtggagaccagatttggaaagtgaaaaggtgaaaatatctctacagtg
caatagcaaaaaaaacctaacctttgcaatgagaagttcaggagattatggagaagtaac
gggagcttggatagagtttggatgtcatagaaataaatcaaaacatcattctgaagcaag
gtttagaattagatgtagatggaatgtagggagtaatacctcgctcattgatacatgtgg
aaacactcaagatgtttcaggtgcgaatcctgtagattgtaccatgtattcaaataaaat
gtacaattgttctttacaaaatgggtttactatgaaggtagatgaccttattgtgcattt
cagtatgacaaaagctgtaaaaatgtataat"
}
{
name	"USCAPETA14"
type		"DNA"
sequence-ID	"valis:32:801176129"
descrip		"USCAPETA14, 512 bases, C0C checksum."
offset		7338
creation-date	 5/24/95 16:44:26
direction	1
strandedness	1
walk		"FALSE"
sequence	"
gaatcaaatggcctattataacagttgtaaatgggaagaggcaaaagtaaagtttcattg
tcaaagaacacagagtcagcctggatcatggtttagagcaatctcgtcatggaaacaaag
aaatagatgggagtggagaccagattttgaaagtaaaaaggtgaaaatatctctacagtg
caatagcacaaaaaacctaacctttgcaatgagaagttcaggagattatggagaagtaac
gggagcttggatagagtttggatgtcatagaaataaatcaaaacttcatgctgaagcaag
gtttagaattagatgtagatggaatgtagggagtaatacctcgctcattgatacatgtgg
aaacactcaaaaagtttcaggtgcgaatcctgtagattgtaccatgtattcaaataaaat
gtacaattgttctttacaaaacgggtttactatgaaggtagatgaccttattatgcattt
caatatgaaaaaggctgtagaaatgtataat"
}
{
name	"USHIgoldAC"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U57015"
descrip		"Feline immunodeficiency virus USHIgoldAC gp100 surface protein"
creator		"Learn,G.H."
offset		7338
creation-date	 6/ 5/96 16:11:40
direction	1
strandedness	1
comments	"(env) gene, partial cds.NID         g1354788
KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 511)
            Rodrigo,A.G., Hoover,E.A. and Mullins,J.I.
  TITLE     Distinct evolutionary patterns and recombination between envelope
            sequence subtypes of feline immunodeficiency virus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-1996) Gerald H. Learn, Microbiology, University
            of Washington, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source          1..511
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /specific_host=`domestic cat`
                     /isolate=`Keaau, HI`
     CDS             <1..>511
                     /gene=`env`
                     /note=`envelope polyprotein; surface glycoprotein`
                     /codon_start=2
                     /product=`gp100 surface protein`
                     /db_xref=`PID:g1354789`
                     /translation=`NQAAYYNSCKWEKTDVKFQCQRTQSQPGIWLRAISSWKQRHRWE
                     WRPDFESEKVKVSLKCNSTKNLTFAMRSSGDYGEVQGAWIEFGCHRNKSKLHTEARFR
                     IRCRWNVGSNSSLIDTCGKDGNITGANPVDCTMTSKTLYNCTLQNGFTMKVDDLIMHF
                     NMTKAVEMYN`
BASE COUNT      193 a     67 c    114 g    137 t

g    137 t"
sequence	"
gaatcaggcagcctattataatagttgtaaatgggaaaaaactgatgtaaaatttcaatg
tcagagaacacaaagtcaaccaggaatttggcttagagcaatctcatcatggaaacaaag
acatagatgggaatggagaccagattttgaaagtgaaaaagtgaaagtatctctaaagtg
taatagcacaaaaaacctaacctttgcaatgagaagttctggagattatggagaagtaca
gggagcttggatagagtttggatgtcatagaaataaatcaaaacttcatactgaagcgag
gtttagaattagatgtagatggaatgttggctccaatagttctctaattgacacatgtgg
aaaggatggtaatattacaggagctaatcctgtggattgtactatgacaagcaagactct
gtacaattgtactttacaaaacgggtttactatgaaggtagatgaccttattatgcattt
caatatgacaaaagctgtggaaatgtacaat"
}
{
name	"USWAabk2BAC"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U57011"
descrip		"Feline immunodeficiency virus USWAabk2BAC gp100 surface protein"
creator		"Learn,G.H."
offset		7338
creation-date	 6/ 5/96 16:11:40
direction	1
strandedness	1
comments	"(env) gene, partial cds.NID         g1354780
KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 511)
            Rodrigo,A.G., Hoover,E.A. and Mullins,J.I.
  TITLE     Distinct evolutionary patterns and recombination between envelope
            sequence subtypes of feline immunodeficiency virus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-1996) Gerald H. Learn, Microbiology, University
            of Washington, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source          1..511
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /specific_host=`domestic cat`
                     /isolate=`Seattle, WA`
     CDS             <1..>511
                     /gene=`env`
                     /note=`envelope polyprotein; surface glycoprotein`
                     /codon_start=2
                     /product=`gp100 surface protein`
                     /db_xref=`PID:g1354781`
                     /translation=`NQRAYYNSCKWEQTNVTFQCERTQSQPGSWIRAIASWRQRNRWE
                     WRPDFESEKVKVSLKCNSTRNLTFAMRSSGDYGEVVGAWIEFGCYRNKTKDLSAARFR
                     IRCKWNEGNNASLIDTCGTNPNVTGANPVDCTMYANKMYNCSLQNGFTMKVDDLIVHF
                     NMTKAVEMYN`
BASE COUNT      197 a     64 c    116 g    134 t

g    134 t"
sequence	"
gaatcaaagggcttattataatagttgtaagtgggaacaaactaatgtaacatttcaatg
tgaaagaacacaaagtcagccaggatcctggataagagcaatcgcgtcatggagacaaag
gaatagatgggaatggagaccagattttgaaagtgaaaaagtgaaagtatctctaaaatg
taatagtacaagaaatcttacctttgcaatgaggagctcaggagattatggtgaggttgt
aggagcctggatagaatttggctgttatagaaacaaaacaaaagatctcagtgcggcaag
atttagaataagatgtaaatggaatgaaggcaacaatgcttcattaattgatacatgtgg
aacaaatccaaacgttacaggtgcaaatcctgtagattgtaccatgtatgcaaataaaat
gtacaattgttctttacaaaatgggtttactatgaaggtagatgacctaattgtgcattt
caatatgacaaaggctgtagaaatgtataat"
}
{
name	"CABCpbar03C"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U02395"
descrip		"Feline immunodeficiency virus CABCpbar03C gp100 (env) gene, partial"
creator		"Sodora,D.L."
offset		7338
creation-date	 5/25/94 17:30: 4
direction	1
strandedness	1
comments	"cds.NID         g457951
KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 669)
            Mullins,J.I.
  TITLE     Identification of three feline immunodeficiency virus (FIV) env
            gene subtypes and comparison of the FIV and human immunodeficiency
            virus type I evolutionary patterns
  JOURNAL   J. Virol. 68, 2230-2238 (1994)
  MEDLINE   94187063
REFERENCE   2  (bases 1 to 669)
  TITLE     Direct Submission
  JOURNAL   Submitted (05-OCT-1993) Donald L. Sodora, Department Microbiology
            and Immunology, Stanford University School of Medicine, Stanford,
            CA 94305-5402, USA
FEATURES             Location/Qualifiers
     source          1..669
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /strain=`CABCpbar03C`
                     /specific_host=`Felis domesticus`
     CDS             <1..>669
                     /gene=`env`
                     /note=`V3-V5`
                     /codon_start=1
                     /product=`gp100`
                     /db_xref=`PID:g457952`
                     /translation=`TSLIKDPDIPKCGWWNQAAYYNSCKWEQANVTFQCQRTQSQPGS
                     WRRTISSWRQQNRWEWRPDFESEKVKISLQCNKYKKLNFAMRSASDFGDITGAWIDFG
                     CHRTPTKRHTEARFRIRCRWNVGSNTSLIDTCGKDKNISGANPVNCDMVAKTLYNCSL
                     QEGFTMKVEDLIMHFNMTRAVEMYNIAGNWSCKSDLPKDWGYMKCNCTNANATEKMKC
                     PAEDG`
BASE COUNT      252 a     90 c    151 g    176 t

g    176 t"
sequence	"
gaatcaggcggcttattataatagttgtaaatgggaacaagctaatgtaacatttcaatg
tcaaagaacacaaagtcaaccaggatcttggcgtaggacaatatcgtcatggaggcaaca
gaataggtgggaatggagaccagattttgaaagtgaaaaggtaaaaatatcattacaatg
taacaagtacaaaaaacttaactttgcaatgagaagtgcatctgattttggtgatattac
aggagcatggatagactttggatgtcatagaaccccaacaaaaaggcatacagaagcaag
atttagaataagatgtaggtggaatgttggctctaacacttctctaattgacacatgtgg
aaaggacaaaaatatttcaggagctaatcctgtaaattgtgatatggtagcaaagacttt
gtacaactgctcattgcaagagggatttactatgaaagtagaagatcttataatgcattt
taacatgacaagggctgtagaaatgtataat"
}
{
name	"CABCpady02C"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U02392"
descrip		"Feline immunodeficiency virus CABCpady02C gp100 (env) gene, partial"
creator		"Sodora,D.L."
offset		7338
creation-date	 5/25/94 17:29:45
direction	1
strandedness	1
comments	"cds.NID         g457945
KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 669)
            Mullins,J.I.
  TITLE     Identification of three feline immunodeficiency virus (FIV) env
            gene subtypes and comparison of the FIV and human immunodeficiency
            virus type I evolutionary patterns
  JOURNAL   J. Virol. 68, 2230-2238 (1994)
  MEDLINE   94187063
REFERENCE   2  (bases 1 to 669)
  TITLE     Direct Submission
  JOURNAL   Submitted (05-OCT-1993) Donald L. Sodora, Department Microbiology
            and Immunology, Stanford University School of Medicine, Stanford,
            CA 94305-5402, USA
FEATURES             Location/Qualifiers
     source          1..669
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /strain=`CABCpady02C`
                     /specific_host=`Felis domesticus`
     CDS             <1..>669
                     /gene=`env`
                     /note=`V3-V5`
                     /codon_start=1
                     /product=`gp100`
                     /db_xref=`PID:g457946`
                     /translation=`TSLIKNPDIPKCGWWNQAAYYNSCRWEKADVQFQCQRTQSQPGN
                     WIRAISSWRQKNRWEWRPDFESERVKISLQCNSTKNLTFAMRSSSDYGDVVGAWIEFG
                     CHRNKSRRHTDARFRIRCKWNVGSNTSLIDTCGKDKNITGANPVDCTMTAKTLYNCSL
                     QEGFTMKIEDLIMHFNMTKAVEMYEIAGNWSCKSDLPTDWGYMKCNCTSKSETDKMKC
                     PAKDG`
BASE COUNT      257 a     83 c    151 g    178 t

g    178 t"
sequence	"
gaatcaggcggcttattataatagttgtagatgggaaaaagctgatgtacaatttcaatg
tcaaagaacacaaagtcaaccgggaaattggattagggcaatatcgtcatggaggcaaaa
gaatagatgggaatggaggccagactttgaaagtgaaagggtaaaaatatcattacaatg
taacagtacaaaaaacttaacttttgcaatgagaagctcatctgattatggtgatgttgt
aggagcatggatagaatttggatgtcatagaaacaaatcacgaaggcatacagatgcaag
atttagaataagatgtaaatggaatgttggctctaatacttctctaattgatacatgtgg
aaaagacaaaaatattacaggagccaatcctgtagattgtactatgacagcaaagactct
gtacaattgctcattacaagagggatttactatgaaaatagaagatcttataatgcattt
taacatgacaaaggctgtagaaatgtatgaa"
}
{
name	"DEBAfredC"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U57020"
descrip		"Feline immunodeficiency virus DEBAfredC gp100 surface protein (env)"
creator		"Learn,G.H."
offset		7338
creation-date	 6/ 5/96 16:11:40
direction	1
strandedness	1
comments	"gene, partial cds.NID         g1354798
KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 508)
            Rodrigo,A.G., Hoover,E.A. and Mullins,J.I.
  TITLE     Distinct evolutionary patterns and recombination between envelope
            sequence subtypes of feline immunodeficiency virus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 508)
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-1996) Gerald H. Learn, Microbiology, University
            of Washington, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source          1..508
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /specific_host=`domestic cat`
                     /isolate=`Munich, Germany`
                     /note=`clade C`
     CDS             <1..>508
                     /gene=`env`
                     /note=`envelope polyprotein; surface glycoprotein`
                     /codon_start=2
                     /product=`gp100 surface protein`
                     /db_xref=`PID:g1354799`
                     /translation=`NQQAYYDTCRWKQPDGEFQCQRTQIQPRNWRRVISSWNLRNRWE
                     WRPDFESEKVKISLQCNSTRNLTFAMRSSGDFSDVVGAWIEFGCHRNKSRTHSDARFR
                     IRCRWNVGSNTSLIDTCGNENITGANPVDCTMTARTLYNCSLQEGFTMKIEDLIMHFN
                     MTKAVEMYN`
BASE COUNT      189 a     72 c    115 g    132 t

g    132 t"
sequence	"
gaatcaacaggcttactatgacacttgtaggtggaaacaacctgatggggaattccaatg
tcaaagaacacaaattcaaccacggaattggagaagggtaatctcctcatggaacctaag
gaataggtgggagtggagaccagattttgaaagtgaaaaggtaaaaatatcattacaatg
caacagtacaagaaatttaacctttgcaatgagaagctcaggtgactttagtgatgttgt
aggagcatggatagaatttgggtgtcatagaaataaatcaagaactcattcagatgcaag
atttagaataagatgcagatggaatgtaggctctaatacttctctaatcgatacatgtgg
g---aatgaaaatattacaggagccaatcctgtagattgtactatgacagcaaggactct
gtacaattgctcattgcaagaggggtttactatgaaaatagaagatcttataatgcattt
taacatgacaaaggctgtagaaatgtataat"
}
{
name	"Fukuoka"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"D37815"
descrip		"Feline immunodeficiency virus gene for envelope polyprotein."
creator		"Kakinuma,S., Motokawa,K., Hohda"
offset		7338
creation-date	 6/ 9/95  9:32:28
direction	1
strandedness	1
comments	"
(FIV-7).NID         g840678
KEYWORDS    .
SOURCE      Feline immunodeficiency virus (individual_isolate Fukuoka, ) RNA.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 2559)
  JOURNAL   Unpublished (1995)
REFERENCE   2  (sites)
            Hashimoto,H.
  TITLE     Nucleotide sequence of feline immunodeficiency virus:
            classification of Japanese isolates into two subtypes which are
            distinct from non-Japanese subtypes
  JOURNAL   J. Virol. 69 (6), 3639-3646 (1995)
  MEDLINE   95264455
COMMENT     Submitted (01-Aug-1994) to DDBJ by:
            Shizuko Kakinuma
            Department of Immunology
            Center for Basic Research
            The Kitasato Institute
            5-9-1 Shirokane, Minato-ku
            Tokyo 108
            Japan
            Phone: 03-3444-6161 x2109
            Email: skakinum@ddbj.nig.ac.jp
            Fax:   03-3444-6637.
            NCBI gi: 840678
FEATURES             Location/Qualifiers
     source          1..2559
                     /organism=`Feline immunodeficiency virus`
                     /isolate=`Fukuoka`
                     /proviral
                     /sequenced_mol=`RNA`
     CDS             1..2559
                     /gene=`env`
                     /note=`NCBI gi: 840679`
                     /codon_start=1
                     /product=`envelope polyprotein`
                     /db_xref=`PID:g840679`
                     /translation=`MAAGFTQNRQWIGPEEAEELLDFDIVTQINEEGPLNPGVNPFRV
                     PAITDTEKQDYCKILQPKLQELREEIKETKLDESNAGKFRRVRYLRYADETALSLIYA
                     LVGYLRYLLERRKLGSLRHDVDIEVSAKEQFNKKEKGTTVNQNYCTKCCVGISVLYFI
                     LFLILVAVTRSQAQVVWRLPPLVVPVEETEIIFWDCWAPEEPACQDFLGTMVQLKASI
                     NISIQEGPTLGHWAREILETLFKKATRQCRRGRVWKRWNETITGPLGCANNTCYNISV
                     VVPDYQCYVDRVDTWLQGRINISLCLTGGKMLYNKDTQQLSYCTEPLQIPLINYTFGP
                     NQTCMWNTSLIEDSEIPKCGWWNQAAYYNSCKWEQTDVKFQCQRTQSQPGTWLRAIAS
                     WKQANRWIWRPDFESDKVKISLQCNSTKNLTFAMRSSSDYGEITGAWIEFGCYRNKSK
                     FHDEARFRIRCRWNEGTNTSLIDTCGDNPNVTGANPVDCTMRANIMYNCSLQNGFTMK
                     IEDLIVHFNMTKAVEMYNIAGNWSCTSDLPKGWGYMNCNCTNGTDNTKMTCPENQGIL
                     RNWYNPVAGLRQALMKYQVVKQPEYLIVPEEVMQYKSKQKRAAIHIMLALATVLSMAG
                     AGTGATAIGMVTQYHQVLATHQQALDKITEALKINNLRLITLEHQVLVIGLKVEAIEK
                     FLYTAFAMQELGCNQNQFFCKIPPSLWSMYNMTLNQTIWNHGNISLGNWYNQTRDLQN
                     KFYEIIMDIEQNNVQGKTGIQQLQKWENWVGWIGKIPQYLKGLLGSVLGIGLGILLLL
                     ICLPTLVDCIRNCTNKILGYTVIAMPEIDDEEVHLSVELRRNGRQCGISEKEEE`
BASE COUNT      958 a    362 c    567 g    672 t"
walk		"FALSE"
sequence	"
gaatcaggcagcttattataatagctgtaaatgggaacagactgatgtgaaatttcagtg
tcaaagaacacaaagtcaaccaggaacatggcttagggcaattgcttcatggaaacaggc
aaatagatggatatggaggccagactttgaaagtgacaaagtgaaaatatcattacagtg
caatagtacaaaaaatttaacctttgctatgagaagctcgagcgattatggtgaaataac
aggagcatggatagaatttgggtgctacaggaataaatctaaatttcatgatgaagcaag
atttagaatacgatgtagatggaatgaaggaactaacacttcactcattgacacatgtgg
ggataatccgaatgtcacaggagccaatcctgtagactgtactatgagggcaaatattat
gtacaattgttctttacaaaatggctttactatgaaaatagaagacctcattgtacattt
taatatgacaaaagctgtggaaatgtataat"
}
{
name	"Shizuoka"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"D37811"
descrip		"Feline immunodeficiency virus gene for envelope polyprotein."
creator		"Kakinuma,S., Motokawa,K., Hohda"
offset		7338
creation-date	 7/25/95  9:32:28
direction	1
strandedness	1
comments	"
(FIV-3).NID         g840672
KEYWORDS    .
SOURCE      Feline immunodeficiency virus (individual_isolate Shizuoka, ) RNA.
            Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
            Retroviridae; Lentivirinae.
REFERENCE   1  (bases 1 to 2574)
  JOURNAL   Unpublished (1995)
REFERENCE   2  (sites)
            Hashimoto,H.
  TITLE     Nucleotide sequence of feline immunodeficiency virus:
            classification of Japanese isolates into two subtypes which are
            distinct from non-Japanese subtypes
  JOURNAL   J. Virol. 69 (6), 3639-3646 (1995)
  MEDLINE   95264455
COMMENT     Submitted (01-Aug-1994) to DDBJ by:
            Shizuko Kakinuma
            Department of Immunology
            Center for Basic Research
            The Kitasato Institute
            5-9-1 Shirokane, Minato-ku
            Tokyo 108
            Japan
            Phone: 03-3444-6161 x2109
            Email: skakinum@ddbj.nig.ac.jp
            Fax:   03-3444-6637.
            NCBI gi: 840672
FEATURES             Location/Qualifiers
     source          1..2574
                     /organism=`Feline immunodeficiency virus`
                     /isolate=`Shizuoka`
                     /proviral
                     /sequenced_mol=`RNA`
     CDS             1..2574
                     /gene=`env`
                     /note=`NCBI gi: 840673`
                     /codon_start=1
                     /product=`envelope polyprotein`
                     /db_xref=`PID:g840673`
                     /translation=`MAAGFSQNRQWIGPEEAEELLDFDIATQINEEGPLNPGVNPFRV
                     PGITDTEKQDYCKILQPKLQELREEINEVKLDEDNAGKFRRVRYLRYADETVLSLIYA
                     LVGYLRYLGNRNKLGSLRHDIDIEVSAKEQFDKKEKGTTINQKYCTRCCVGISVLYLI
                     LFIIIVAVTGSQAQVVWRHPPLVVPVEETEIIFWDCWAPEEPACQDFLGTMVQLKASI
                     NIGIQEGPTLGHWAREIWSTLFKKATRQCRRGRVWRRWNETITGPLGCANNTCYNISV
                     VVPDYQCYVDRVDTWLQGRINISLCLTGGKMLYNKDTQQLSYCTEPLQIPLINYTFGP
                     NQTCMWNTSLIEDSEIPKCGWWNQAAYYNSCKWEQTDVKFQCLRTQSQPGNWLRTISS
                     WKQSNRWIWRPDFESDKVKISLQCNSTKNLTFAMRSSGDYGEITGAWIEFGCYRNKSK
                     SHGEARFRIRCRWNEGTNTSLIDTCGSTPNVKGANPVDCTMKANTMYNCSLQNGFTMK
                     IEDLIVHFNMTKAVEMYNIAGNWSCNSDIPPGWGYMNCNCTNSTSSSFPTCPKMACPR
                     ERGILRNWYNPIAGLRHALQKYQVVKQPAYLLVPEEVMEYKPSQKRAAIHIILALATV
                     LSIAGAGTGATAIGMVTQYHQVLATHQKAIDQITEALKINNLRLVTLEHQVLVIGLKV
                     EAIEKFIYTAFAMQELGCNQNQFFCKIPPELWIRYNMSINQTIWNHGNISLRDWYNNT
                     QQLQKKFYEIIYDIEQNNVQGKQGLQQLQKWETWVSWIGKIPQYLKGLFGSILGIGLG
                     ILLMILCLPTLVDCMRNCLNRVLGYTVIAMPTIDDEGTDFPVELRRNGGQCGMSEKEE
                     E`
BASE COUNT      966 a    370 c    563 g    675 t"
walk		"FALSE"
sequence	"
gaatcaggcagcttattataatagctgtaaatgggaacaaactgatgtgaaatttcagtg
tctaagaacacaaagtcaaccaggaaactggcttaggacaatctcttcatggaaacagag
taatagatggatatggaggccagactttgaaagtgacaaggtgaaaatatcattacaatg
caatagtacaaaaaatttaacctttgctatgagaagctcgggcgattatggtgaaataac
aggagcatggatagaatttgggtgctacagaaataaatctaaatctcatggggaagcaag
atttagaatacgatgtagatggaatgaaggaactaacacttcactcattgacacatgtgg
gagtactccgaatgtcaaaggagccaatcccgtagactgtactatgaaggcaaatactat
gtataattgttctttacaaaatggctttactatgaaaatagaagacctcattgtacattt
taatatgacaaaagctgtggaaatgtataat"
}
{
name	"USCAherrB"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U57016"
descrip		"Feline immunodeficiency virus USCAherrB gp100 surface protein (env)"
creator		"Learn,G.H."
offset		7338
creation-date	 6/ 5/96 16:11:40
direction	1
strandedness	1
comments	"gene, partial cds.NID         g1354790
KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 511)
            Rodrigo,A.G., Hoover,E.A. and Mullins,J.I.
  TITLE     Distinct evolutionary patterns and recombination between envelope
            sequence subtypes of feline immunodeficiency virus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-1996) Gerald H. Learn, Microbiology, University
            of Washington, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source          1..511
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /specific_host=`domestic cat`
                     /isolate=`Portola Valley, CA`
                     /note=`clade B`
     CDS             <1..>511
                     /gene=`env`
                     /note=`envelope polyprotein; surface glycoprotein`
                     /codon_start=2
                     /product=`gp100 surface protein`
                     /db_xref=`PID:g1354791`
                     /translation=`NQRAYYNSCKWEQTDVKFQCQRKQSQPGSWIRAISSWKQRNRWE
                     WRPDFESEKVKISLQCNSTKNLTFAMRSTSDYYDITGAWIEFGCYRNKSRTHSSGRFR
                     IRCRWNQGSNASLIDTCGNNSNISGANPVDCTMKANTMYNCSLQDSFTMKIEDLIVHF
                     NMTKAMEMYN`
BASE COUNT      204 a     66 c    107 g    134 t

g    134 t"
sequence	"
gaatcaacgagcttattacaatagttgcaagtgggagcaaactgatgtaaaattccaatg
tcaaagaaaacaaagtcaaccaggatcatggattagggcaatctcctcatggaaacaaag
aaatagatgggagtggaggccagactttgaaagtgagaaagtaaaaatatcattacaatg
taacagtacaaaaaatttaacttttgcaatgagaagtacaagtgattattatgatattac
aggagcatggatagaatttggatgttatagaaacaagtcaaggacacatagtagcggaag
attcagaattaggtgtagatggaatcaaggaagcaatgcttcgctcattgatacatgtgg
gaacaattcaaacatttcaggagctaatcctgtagattgcacaatgaaagcaaatactat
gtataattgctcattgcaagatagttttactatgaaaatagaggaccttattgtacattt
taatatgacaaaagctatggaaatgtataat"
}
{
name	"USPAprinB"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U57018"
descrip		"Feline immunodeficiency virus USPAprinB gp100 surface protein (env)"
creator		"Learn,G.H."
offset		7338
creation-date	 6/ 5/96 16:11:40
direction	1
strandedness	1
comments	"gene, partial cds.NID         g1354794
KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 511)
            Rodrigo,A.G., Hoover,E.A. and Mullins,J.I.
  TITLE     Distinct evolutionary patterns and recombination between envelope
            sequence subtypes of feline immunodeficiency virus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-1996) Gerald H. Learn, Microbiology, University
            of Washington, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source          1..511
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /specific_host=`domestic cat`
                     /isolate=`Norristown, PA`
                     /note=`clade B`
     CDS             <1..>511
                     /gene=`env`
                     /note=`envelope polyprotein; surface glycoprotein`
                     /codon_start=2
                     /product=`gp100 surface protein`
                     /db_xref=`PID:g1354795`
                     /translation=`DQNAYYNSCRWEQTNVTFQCQRTQSQSGSWFRTISSWKQRNRWE
                     WRPDFESEKVKISLQCNSTENLTFAMRSSSDYYDVQGAWIEFGCYRNKSKRHSEGRFR
                     IRCRWNQGSNASLIDTCGNNPNITGANPVDCTMRANTMYNCSLQDSFTMKIEDLIVHF
                     NMTKAVEMYN`
BASE COUNT      197 a     63 c    114 g    137 t

g    137 t"
sequence	"
ggaccaaaacgcttattacaatagttgcaggtgggagcaaactaatgtgacattccaatg
tcaaagaacacaaagtcaatcaggatcatggtttagaacaatttcttcatggaaacagag
aaatagatgggaatggaggccagactttgaaagtgagaaagtaaaaatatcattgcaatg
taacagtacagaaaacttaacttttgcaatgagaagttcaagtgattattatgatgttca
aggagcatggatagaatttggatgttatagaaacaaatcaaagagacatagtgaaggaag
attcagaataaggtgtagatggaatcaagggagtaatgcttcgctcattgatacatgtgg
gaataatccaaatattacaggagctaatcctgtagattgcacaatgagagcaaatactat
gtataattgctcgttgcaggatagttttactatgaaaatagaggaccttattgtacattt
taatatgacaaaggctgtggaaatgtataat"
}
{
name	"USPAgeorB"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U57014"
descrip		"Feline immunodeficiency virus USPAgeorB gp100 surface protein (env)"
creator		"Learn,G.H."
offset		7338
creation-date	 6/ 5/96 16:11:40
direction	1
strandedness	1
comments	"gene, partial cds.NID         g1354786
KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 511)
            Rodrigo,A.G., Hoover,E.A. and Mullins,J.I.
  TITLE     Distinct evolutionary patterns and recombination between envelope
            sequence subtypes of feline immunodeficiency virus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-1996) Gerald H. Learn, Microbiology, University
            of Washington, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source          1..511
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /specific_host=`domestic cat`
                     /isolate=`Phoenixville, PA`
                     /note=`clade B`
     CDS             <1..>511
                     /gene=`env`
                     /note=`envelope polyprotein; surface glycoprotein`
                     /codon_start=2
                     /product=`gp100 surface protein`
                     /db_xref=`PID:g1354787`
                     /translation=`NQHAYYNSCKWEQTNVTFRCQRTQSQPGSWIRTISSWKRKNRWE
                     WRPDFESEKVKISLQCNSTKNLTFAMRSSSDYYDVTGAWIEFGCYRNKSKMHSEGRFR
                     IRCRWNQGNNASFIDTCGNTPNVSGANPVDCTMKANTMYNCSLQDSFTMKIEDLIVHF
                     NMTKAVEMYN`
BASE COUNT      195 a     63 c    112 g    141 t

g    141 t"
sequence	"
gaaccaacatgcttattataatagttgcaagtgggagcagactaatgtgacattccgatg
tcaaagaacacaaagtcagcccggatcatggattaggacaatttcatcatggaaacgaaa
gaatagatgggagtggagaccagactttgaaagtgagaaagtaaaaatatcattacaatg
taacagtacaaaaaatttaacttttgcaatgagaagttcaagtgattattatgatgttac
aggagcatggatagaatttggatgttatagaaacaaatcgaagatgcatagtgagggaag
attcagaataaggtgtagatggaatcaaggaaataatgcttcattcattgatacatgtgg
gaatactccaaatgtttcaggagctaatcctgtagattgtactatgaaagcaaatactat
gtataattgctcgttgcaagatagctttactatgaagatagaggaccttattgtacattt
taatatgacaaaagctgtggaaatgtataat"
}
{
name	"DEBAmickU"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U57017"
descrip		"Feline immunodeficiency virus DEBAmickU gp100 surface protein (env)"
creator		"Learn,G.H."
offset		7338
creation-date	 6/ 5/96 16:11:40
direction	1
strandedness	1
comments	"gene, partial cds.NID         g1354792
KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 511)
            Rodrigo,A.G., Hoover,E.A. and Mullins,J.I.
  TITLE     Distinct evolutionary patterns and recombination between envelope
            sequence subtypes of feline immunodeficiency virus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-1996) Gerald H. Learn, Microbiology, University
            of Washington, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source          1..511
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /specific_host=`domestic cat`
                     /isolate=`Munich, Germany`
     CDS             <1..>511
                     /gene=`env`
                     /note=`envelope polyprotein; surface glycoprotein`
                     /codon_start=2
                     /product=`gp100 surface protein`
                     /db_xref=`PID:g1354793`
                     /translation=`NQAAYYNSCKWEPSNVTFQCQRTQSQFGTWIRAISSWKQRNRWE
                     WRPDFESEKVELSLQCNSTKNLTFAMRRTSDYYDITGAWIDFGCYRNKSRRHEGTRFR
                     IRCRWNEGKIASLIDTCGTNPNVSGANPVDCTMKANTMYNCSLQNGFTMKIEDLIVHF
                     NMTKAVEMYN`
BASE COUNT      192 a     68 c    114 g    137 t

g    137 t"
sequence	"
gaatcaagcagcttattataatagttgcaaatgggaaccaagtaatgtaacgttccaatg
tcaaagaacacagagtcaatttggaacctggattagggcgatttcctcgtggaaacaaag
gaataggtgggagtggaggccagattttgaaagtgagaaagtagaattatcattacagtg
taatagcacaaaaaacttaacttttgcaatgcgaaggacaagtgattattatgatatcac
aggagcatggatagattttggatgttatagaaacaaatcacgacgccatgagggtacaag
atttagaataagatgcagatggaatgaaggaaaaattgcctcactcatagatacatgtgg
tactaatccaaatgtgtcaggagctaatcctgtagattgtactatgaaagcaaacactat
gtacaattgttcactgcaaaatggttttacgatgaaaatagaggatcttattgtacattt
taatatgacaaaagctgtggaaatgtataat"
}
{
name	"USMDsilvB"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U57022"
descrip		"Feline immunodeficiency virus USMDsilvB gp100 surface protein (env)"
creator		"Learn,G.H."
offset		7338
creation-date	 6/ 5/96 16:11:40
direction	1
strandedness	1
comments	"gene, partial cds.NID         g1354802
KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 511)
            Rodrigo,A.G., Hoover,E.A. and Mullins,J.I.
  TITLE     Distinct evolutionary patterns and recombination between envelope
            sequence subtypes of feline immunodeficiency virus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-1996) Gerald H. Learn, Microbiology, University
            of Washington, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source          1..511
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /specific_host=`domestic cat`
                     /isolate=`Takoma Park, MD`
                     /note=`clade B`
     CDS             <1..>511
                     /gene=`env`
                     /note=`envelope polyprotein; surface glycoprotein`
                     /codon_start=2
                     /product=`gp100 surface protein`
                     /db_xref=`PID:g1354803`
                     /translation=`NQAAYYNSCQWEEANVTFQCQRTQSLPGIWVRRISSWKQRNRWE
                     WRPDFESEKVKISLQCNSTKNLTFAMRSSSDYYDIQGAWIEFGCYRDKSKTHSKARFR
                     IRCKWNEGKNRSLIDTCGNTLNVAGANPVDCTMKASTMYNCSLQDGFTMKIEDLVVHF
                     NMTKAVEMYN`
BASE COUNT      194 a     67 c    114 g    136 t

g    136 t"
sequence	"
gaaccaggcagcttattataatagttgtcaatgggaagaagccaacgtgacatttcaatg
tcaaagaacacaaagtctacctggaatttgggttaggagaatttcttcatggaaacaaag
gaacagatgggagtggaggccagactttgaaagtgagaaagtaaaaatatcattgcaatg
taatagtacaaaaaatttaacttttgcaatgagaagttcaagtgattattatgacataca
aggggcatggatagaatttggatgttatagagataaatcaaaaacccattcaaaggcaag
atttagaataagatgtaaatggaatgagggaaagaatagatcactcattgatacctgtgg
gaatactttaaatgtcgcaggagccaaccctgtagattgtactatgaaagcgagcactat
gtacaactgttccttacaggatggctttactatgaaaatagaggaccttgttgtacattt
taatatgacaaaagctgtggaaatgtataat"
}
{
name	"USMAsboy03B"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U02419"
descrip		"Feline immunodeficiency virus USMAsboy03B gp100 (env) gene, partial"
creator		"Sodora,D.L."
offset		7338
creation-date	 5/13/94 18:33:22
direction	1
strandedness	1
comments	"
cds.KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viridae; Viruses; Retroviridae; Lentivirus.
REFERENCE   1  (bases 1 to 675)
            Mullins,J.I.
  TITLE     Identification of three feline immunodeficiency virus (FIV) env
            gene subtypes and comparison of the FIV and human immunodeficiency
            virus type I evolutionary patterns
  JOURNAL   J. Virol. 68, 2230-2238 (1994)
  STANDARD  full automatic
REFERENCE   2  (bases 1 to 675)
  TITLE     Direct Submission
  JOURNAL   Submitted (05-OCT-1993) Donald L. Sodora, Department Microbiology
            and Immunology, Stanford University School of Medicine, Stanford,
            CA 94305-5402, USA
  STANDARD  full automatic
COMMENT     NCBI gi: 457999
FEATURES             Location/Qualifiers
     source          1..675
                     /strain=`USMAsboy03B`
                     /organism=`Feline immunodeficiency virus`
                     /specific_host=`Felis domesticus`
                     /proviral
     CDS             <1..>675
                     /gene=`env (V3-V5)`
                     /note=`NCBI gi: 458000`
                     /codon_start=1
                     /product=`gp100`
                     /translation=`ASLIQDPEIPKCGWWNQAAYYNSCKWEQTDVKFQCQRTQSQPGS
                     WIRNIASWKQRNRWEWRPDFESEKVKISLQCNSTKNLTFAMRSSSDYYDVTGAWIEFG
                     CYRNKSKNHAGARFRIRCKWNEGKNISLIDTCGTNPNVTRANPVDCTMKANTMYNCSL
                     QSSFNMKIEDLIVHFNMTKAVEMYNIAGNWSCTSDLPKEWGYMNCNCTNSTSHIAPKM
                     ECPQNNG`
BASE COUNT      256 a     91 c    148 g    180 t
g    180 t"
walk		"FALSE"
sequence	"
gaaccaagcagcttattacaatagttgcaagtgggagcaaactgatgtgaaatttcaatg
tcaaagaacacaaagtcaaccaggatcatggattaggaacattgcttcatggaaacaaag
aaataggtgggagtggaggccagactttgaaagtgagaaagtaaaaatatcattacaatg
taatagtacaaagaatttaacttttgcaatgagaagttcaagtgattattatgatgttac
aggggcatggatagaatttggatgttatagaaataaatcaaaaaaccatgcgggggcaag
atttagaataagatgtaaatggaatgaaggaaaaaatatctcacttattgatacatgtgg
gacaaatccaaatgtcacaagagctaacccggtagattgcactatgaaagcaaatactat
gtataattgctcgttgcaaagtagctttaatatgaaaatagaggaccttattgtacattt
taatatgacaaaagctgtggaaatgtataat"
}
{
name	"USMEcharB"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U57023"
descrip		"Feline immunodeficiency virus USMEcharB gp100 surface protein (env)"
creator		"Learn,G.H."
offset		7338
creation-date	 6/ 5/96 16:11:40
direction	1
strandedness	1
comments	"gene, partial cds.NID         g1354804
KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 508)
            Rodrigo,A.G., Hoover,E.A. and Mullins,J.I.
  TITLE     Distinct evolutionary patterns and recombination between envelope
            sequence subtypes of feline immunodeficiency virus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 508)
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-1996) Gerald H. Learn, Microbiology, University
            of Washington, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source          1..508
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /specific_host=`domestic cat`
                     /isolate=`York, ME`
                     /note=`clade B`
     CDS             <1..>508
                     /gene=`env`
                     /note=`envelope polyprotein; surface glycoprotein`
                     /codon_start=2
                     /product=`gp100 surface protein`
                     /db_xref=`PID:g1354805`
                     /translation=`NQAAYYNSCKWEQTNVKFHCQRIQSQPGSWRRIISSWRQRNRWE
                     WRPDFESEKVKVSLQCNSTQNLTFAMRSTSDYYDVTGAWIEFGCYRNKSRQHTGTRFR
                     IRCKWNEGKNISRIDTCGNNNVTGANSVDCTLKANTMYNCSLQESFTMKIEDLIVHFN
                     MTKAVEMYN`
BASE COUNT      200 a     58 c    111 g    139 t

g    139 t"
sequence	"
gaatcaagcagcttattacaatagttgtaaatgggaacaaactaatgtaaaattccattg
tcaaagaatacaaagtcaaccaggatcatggagaagaatcatatcctcatggaggcaaag
gaatagatgggaatggaggccagactttgaaagtgaaaaagtaaaagtatctttacaatg
taatagtacacaaaatttgacttttgcaatgaggagtacaagtgattattatgatgtcac
aggagcatggatagaatttggatgttatagaaacaaatcaaggcaacatactgggacaag
atttagaataaggtgtaaatggaatgagggaaagaatatatcacgtattgatacatgtgg
g---aataataatgtcacaggggctaactctgtagattgtactttgaaggcaaatactat
gtataattgctctttacaagagagttttactatgaaaatagaggatcttattgtacactt
taatatgacaaaagctgtggagatgtataat"
}
{
name	"USCOgrouB"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U57013"
descrip		"Feline immunodeficiency virus USCOgrouB gp100 surface protein (env)"
creator		"Learn,G.H."
offset		7338
creation-date	 6/ 5/96 16:11:40
direction	1
strandedness	1
comments	"gene, partial cds.NID         g1354784
KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 511)
            Rodrigo,A.G., Hoover,E.A. and Mullins,J.I.
  TITLE     Distinct evolutionary patterns and recombination between envelope
            sequence subtypes of feline immunodeficiency virus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-1996) Gerald H. Learn, Microbiology, University
            of Washington, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source          1..511
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /specific_host=`domestic cat`
                     /isolate=`Denver, CO`
                     /note=`clade B`
     CDS             <1..>511
                     /gene=`env`
                     /note=`envelope polyprotein; surface glycoprotein`
                     /codon_start=2
                     /product=`gp100 surface protein`
                     /db_xref=`PID:g1354785`
                     /translation=`DQNAYYNSCQWEKTDVKFHCQRTQSQPGSWKRIISSWKQRNRWE
                     WRPDFESEKVQISLQCNSTRNLTFAMRSSSDYYDIQGAWIEFGCYRNKSRQHTGTRFR
                     IRCKWNEGNDMSLIDTCGNTQNVTRANPVDCTLKANTMYNCSLQDSFTMKIEDLIVHF
                     NMTKAVEMYN`
BASE COUNT      204 a     64 c    106 g    137 t

g    137 t"
sequence	"
ggaccaaaacgcttattacaatagttgccaatgggaaaaaacagatgtaaaattccactg
tcaaagaacacaaagtcaaccaggatcatggaaaaggataatatcctcatggaagcagag
gaatagatgggaatggaggccagactttgaaagtgaaaaagtacaaatatctttacaatg
taatagtacaagaaatttaacttttgcaatgaggagttcaagtgattattatgatataca
aggggcatggatagaatttgggtgttataggaacaaatcaagacaacatactgggacaag
atttagaataagatgtaaatggaatgagggaaatgatatgtctcttattgatacatgtgg
gaatactcaaaatgttacaagagccaaccctgtagattgcactttgaaagcaaatactat
gtataattgctctttacaagatagttttactatgaaaatagaggaccttattgtacattt
taatatgacaaaagctgtggaaatgtataat"
}
{
name	"USALspuzB"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U57019"
descrip		"Feline immunodeficiency virus USALspuzB gp100 surface protein (env)"
creator		"Learn,G.H."
offset		7338
creation-date	 6/ 5/96 16:11:40
direction	1
strandedness	1
comments	"gene, partial cds.NID         g1354796
KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 511)
            Rodrigo,A.G., Hoover,E.A. and Mullins,J.I.
  TITLE     Distinct evolutionary patterns and recombination between envelope
            sequence subtypes of feline immunodeficiency virus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-1996) Gerald H. Learn, Microbiology, University
            of Washington, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source          1..511
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /specific_host=`domestic cat`
                     /isolate=`Alexander City, AL`
                     /note=`clade B`
     CDS             <1..>511
                     /gene=`env`
                     /note=`envelope polyprotein; surface glycoprotein`
                     /codon_start=2
                     /product=`gp100 surface protein`
                     /db_xref=`PID:g1354797`
                     /translation=`DQKAYYNSCRWEKTDVKFQCQRTQSQPGSWIRAISSWRQKNRWE
                     WRPDFESEKVKISLQCNSTKNLTFAMRSSSDYYDVQGAWIEFGCYRNTSRKHIGTRFR
                     IRCKWNEGNNASLIDTCGTDPNVTGANPVNCTLKANTMYNCSLQDSFTMKIEDLIVHF
                     NMTKAVEMYN`
BASE COUNT      198 a     63 c    113 g    137 t

g    137 t"
sequence	"
ggaccaaaaagcttattacaatagttgcagatgggaaaaaaccgatgtaaaattccaatg
tcaaagaacacaaagtcaaccaggatcatggattagggcaatatcctcatggaggcaaaa
gaatagatgggagtggaggccagactttgaaagtgagaaagtaaaaatatctttacaatg
taatagtacaaagaatttaacgtttgcaatgaggagttcgagtgattattatgatgtaca
aggggcatggatagaatttggatgttataggaatacatcaagaaaacatattgggacaag
atttagaataagatgtaaatggaatgagggtaataatgcgtcacttattgatacatgtgg
gactgatccaaatgtcacaggggccaaccctgtaaactgtactttgaaagcaaatactat
gtataattgctctttacaggatagttttactatgaaaatagaggaccttattgtacattt
taatatgacaaaagctgtagaaatgtataat"
}
{
name	"USTXmtex03B"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U02422"
descrip		"Feline immunodeficiency virus USTXmtex03B gp100 (env) gene, partial"
creator		"Sodora,D.L."
offset		7338
creation-date	 5/13/94 18:33:41
direction	1
strandedness	1
comments	"
cds.KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viridae; Viruses; Retroviridae; Lentivirus.
REFERENCE   1  (bases 1 to 675)
            Mullins,J.I.
  TITLE     Identification of three feline immunodeficiency virus (FIV) env
            gene subtypes and comparison of the FIV and human immunodeficiency
            virus type I evolutionary patterns
  JOURNAL   J. Virol. 68, 2230-2238 (1994)
  STANDARD  full automatic
REFERENCE   2  (bases 1 to 675)
  TITLE     Direct Submission
  JOURNAL   Submitted (05-OCT-1993) Donald L. Sodora, Department Microbiology
            and Immunology, Stanford University School of Medicine, Stanford,
            CA 94305-5402, USA
  STANDARD  full automatic
COMMENT     NCBI gi: 458005
FEATURES             Location/Qualifiers
     source          1..675
                     /strain=`USTXmtex03B`
                     /organism=`Feline immunodeficiency virus`
                     /specific_host=`Felis domesticus`
                     /proviral
     CDS             <1..>675
                     /gene=`env (V3-V5)`
                     /note=`NCBI gi: 458006`
                     /codon_start=1
                     /product=`gp100`
                     /translation=`TSLIKDPEIPKCGWWNQKAYYNSCRWEKTDVKFQCQRTQSQPGS
                     WIRAISSWRQKNRWEWRPDFESEKVKISLQCNSTRNLTFAMRSSSDYYDVQGAWIEFG
                     CYRNTSRRHTGTRFRIRCKWNEGNNASLIDTCGTDPNVTGANPVNCTLKANTMYNCSL
                     QDSFTMKIEDLIVHFNMTKAVEMYNIAGNWSCTSDLPKEWGYMKCNCTTKSESIGTKT
                     ACPDTAG`
BASE COUNT      254 a     91 c    153 g    177 t
g    177 t"
walk		"FALSE"
sequence	"
gaaccaaaaagcttattacaatagttgcagatgggaaaaaactgatgtaaaatttcaatg
tcaaagaacacaaagtcaaccgggatcatggattagggcaatatcctcatggaggcaaaa
gaatagatgggaatggaggccagactttgaaagtgagaaagtaaaaatatctttacaatg
taatagtacaaggaatttaacttttgcaatgaggagttcgagtgattattatgatgtaca
aggggcatggatagaatttggatgttatagaaatacatcaagaagacatactgggacaag
atttagaataagatgtaaatggaatgagggtaataatgcatcacttattgatacatgtgg
gactgatccaaatgtcacaggggccaatcctgtaaactgtactctgaaagcaaatactat
gtataattgttctttacaggatagttttaccatgaaaatagaggaccttattgtacattt
taatatgacaaaagctgtagaaatgtataat"
}
{
name	"USVAcarmB"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U57012"
descrip		"Feline immunodeficiency virus USVAcarmB gp100 surface protein (env)"
creator		"Learn,G.H."
offset		7338
creation-date	 6/ 5/96 16:11:40
direction	1
strandedness	1
comments	"gene, partial cds.NID         g1354782
KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 511)
            Rodrigo,A.G., Hoover,E.A. and Mullins,J.I.
  TITLE     Distinct evolutionary patterns and recombination between envelope
            sequence subtypes of feline immunodeficiency virus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-1996) Gerald H. Learn, Microbiology, University
            of Washington, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source          1..511
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /specific_host=`domestic cat`
                     /isolate=`Roanoke, VA`
                     /note=`clade B`
     CDS             <1..>511
                     /gene=`env`
                     /note=`envelope polyprotein; surface glycoprotein`
                     /codon_start=2
                     /product=`gp100 surface protein`
                     /db_xref=`PID:g1354783`
                     /translation=`DQKAYYNSCRWERTDVKFQCQRTQSQPGSWIRAISSWRQRNRWE
                     WRPDFESEKVKISLQCNSTRNLTFAMRSSSDYYDVQGAWIEFGCYRNKSRMHSGARFR
                     IRCKWNEGNNASLIDTCGTDPNVTGANPVNCTLKANTMYNCSLQDSFTMKIEDLIVHF
                     NMTKAVEMYN`
BASE COUNT      191 a     65 c    117 g    138 t

g    138 t"
sequence	"
ggaccaaaaagcttattacaatagttgcagatgggaacgaactgatgtaaaattccaatg
tcaaagaacacaaagtcaaccaggatcatggattagggcaatatcctcatggaggcaaag
aaatagatgggagtggagaccagactttgaaagtgagaaagtaaaaatatctttacaatg
taatagtacaaggaatttaacttttgcaatgaggagttcgagtgattattatgatgtaca
aggggcatggatagagtttggatgttataggaataaatcaagaatgcactccggggcaag
gtttagaataagatgtaaatggaatgagggtaataatgcgtcacttatcgatacatgtgg
gactgatccaaatgtcacaggggccaaccctgtaaactgtactttgaaagcaaatactat
gtataattgttctttacaggatagttttactatgaaaatagaggaccttattgtacattt
taatatgacaaaagctgtagaaatgtataat"
}
{
name	"USMOglwd03B"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U02420"
descrip		"Feline immunodeficiency virus USMOglwd03B gp100 (env) gene, partial"
creator		"Sodora,D.L."
offset		7338
creation-date	 5/13/94 17:31:30
direction	1
strandedness	1
comments	"cds.NID         g458001
KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 672)
            Mullins,J.I.
  TITLE     Identification of three feline immunodeficiency virus (FIV) env
            gene subtypes and comparison of the FIV and human immunodeficiency
            virus type I evolutionary patterns
  JOURNAL   J. Virol. 68, 2230-2238 (1994)
  MEDLINE   94187063
REFERENCE   2  (bases 1 to 672)
  TITLE     Direct Submission
  JOURNAL   Submitted (05-OCT-1993) Donald L. Sodora, Department Microbiology
            and Immunology, Stanford University School of Medicine, Stanford,
            CA 94305-5402, USA
FEATURES             Location/Qualifiers
     source          1..672
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /strain=`USMOglwd03B`
                     /specific_host=`Felis domesticus`
     CDS             <1..>672
                     /gene=`env (V3-V5)`
                     /codon_start=1
                     /product=`gp100`
                     /db_xref=`PID:g458002`
                     /translation=`TSLIKDSEIPKCGWWNQRAYYNACKWEEANVTFQCYRTQSQPGS
                     WIRAISSWRHRNRWEWRPDFESDKVKISIQCNSTRNLTFAMRSSSDYSDVTGAWIEFG
                     CYRNKSKTHTGTRFRIRCRWNEGNNASLIDTCGTNPNVTGANPVDCTMKASILYNCSL
                     QDGFTMKVEDLIVHFNMTKAVEMYNIAGNWSCTSDLPKGWGYMNCNCTNGTNDNTKME
                     CPKAQG`
BASE COUNT      245 a     93 c    157 g    177 t

g    177 t"
sequence	"
gaaccaaagagcttattacaatgcttgtaaatgggaagaagctaatgtgactttccagtg
ttacagaacacaaagtcaaccaggatcatggattagggcaatctcctcatggagacacag
gaatagatgggaatggaggccagactttgaaagtgacaaagtaaaaatatctatacaatg
caacagtacaaggaatttaacttttgcaatgaggagttcgagtgattattctgatgttac
aggggcatggatagaatttggatgttataggaacaaatcaaagacacatacggggacaag
atttagaataagatgtagatggaatgagggtaataatgcgtcacttatcgatacatgtgg
gacaaatccaaatgtcacaggagccaatccagtagattgtactatgaaagcaagtattct
gtacaattgctcgttacaagatggttttactatgaaagtagaggaccttattgtacattt
caatatgacgaaagctgtggaaatgtataat"
}
{
name	"USALsylvB"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U57021"
descrip		"Feline immunodeficiency virus USALsylvB gp100 surface protein (env)"
creator		"Learn,G.H."
offset		7338
creation-date	 6/ 5/96 16:11:40
direction	1
strandedness	1
comments	"gene, partial cds.NID         g1354800
KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 511)
            Rodrigo,A.G., Hoover,E.A. and Mullins,J.I.
  TITLE     Distinct evolutionary patterns and recombination between envelope
            sequence subtypes of feline immunodeficiency virus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-1996) Gerald H. Learn, Microbiology, University
            of Washington, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source          1..511
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /specific_host=`domestic cat`
                     /isolate=`Alexander City, AL`
                     /note=`clade B`
     CDS             <1..>511
                     /gene=`env`
                     /note=`envelope polyprotein; surface glycoprotein`
                     /codon_start=2
                     /product=`gp100 surface protein`
                     /db_xref=`PID:g1354801`
                     /translation=`DQAAYYNECKWEEANVTFQCHRTQSQPGSWIRAISSWKQRNRWE
                     WRPDFESEKVKISLQCNSTKNLTFAMRSSSDYYDVQGAWIEFGCYRQKSKKHSAARFR
                     IRCKWNKGNNISLIDTCGTNPNVTGANPVDCTMKANTMYNCSLQDSFTMKIEDLIVHF
                     NMTKAVEMYN`
BASE COUNT      205 a     65 c    108 g    133 t

g    133 t"
sequence	"
ggaccaagcagcttattacaatgagtgtaaatgggaagaagctaatgtgacatttcagtg
tcacagaacacaaagtcaaccaggatcatggattagggcaatttcctcatggaaacaaag
aaatagatgggaatggaggccagactttgaaagtgagaaagtaaaaatatcattacaatg
caatagtacaaaaaatttaacatttgcaatgagaagttcgagtgattattatgatgtaca
aggagcatggatagaatttggatgttatagacagaaatcaaaaaagcatagcgcggcaag
atttagaataagatgtaaatggaataaaggaaacaatatttcacttattgatacatgtgg
gacaaatccaaatgttacaggagccaacccggtagattgtactatgaaggcaaatactat
gtacaattgctctttacaagatagttttactatgaaaatagaggaccttattgtacattt
taatatgacaaaagctgtggaaatgtataat"
}
{
name	"USCA2546_8"
type		"DNA"
sequence-ID	"valis:79:801177421"
descrip		"FIV2546_8, 2082 bases, 1077 checksum."
offset		7338
creation-date	 5/24/95 16:44:26
direction	1
strandedness	1
comments	""
walk		"FALSE"
sequence	"
gaaccaaagagcttattacaatgcttgtaaatgggaagaagctaatgtgacatttcagtg
tcacagaacacaaagtaaaccaggatcatggattagggcaatctcctcatggaaacaaag
aaatagatgggaatggaggccagattttgaaagtgagaaagtaaaaataacattacaatg
tgatagtacaaaaaatttaacatttgcaatgagaagttcacgtgattattatgatgtaca
aggagcatggatagaatttggatgtcatagaaataaatcaaaaatgcactccgaggcaag
atttagaataagatgtaaatggaatgaaggaaaaaatatctcactcattgatacatgtgg
gacaattccaaatgtcaaaggggccaacccggtagattgtactatgagggcaaatactat
gtacaattgctctttacaagatagttttactatgaaaatagaggaccttattgtacactt
taatatgacaaaagctgtggaaatgtataat"
}
{
name	"USILbrny03B"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U02418"
descrip		"Feline immunodeficiency virus USILbrny03B gp100 (env) gene, partial"
creator		"Sodora,D.L."
offset		7338
creation-date	 5/13/94 18:33:15
direction	1
strandedness	1
comments	"
cds.KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viridae; Viruses; Retroviridae; Lentivirus.
REFERENCE   1  (bases 1 to 672)
            Mullins,J.I.
  TITLE     Identification of three feline immunodeficiency virus (FIV) env
            gene subtypes and comparison of the FIV and human immunodeficiency
            virus type I evolutionary patterns
  JOURNAL   J. Virol. 68, 2230-2238 (1994)
  STANDARD  full automatic
REFERENCE   2  (bases 1 to 672)
  TITLE     Direct Submission
  JOURNAL   Submitted (05-OCT-1993) Donald L. Sodora, Department Microbiology
            and Immunology, Stanford University School of Medicine, Stanford,
            CA 94305-5402, USA
  STANDARD  full automatic
COMMENT     NCBI gi: 457997
FEATURES             Location/Qualifiers
     source          1..672
                     /strain=`USILbrny03B`
                     /organism=`Feline immunodeficiency virus`
                     /specific_host=`Felis domesticus`
                     /proviral
     CDS             <1..>672
                     /gene=`env (V3-V5)`
                     /note=`NCBI gi: 457998`
                     /codon_start=1
                     /product=`gp100`
                     /translation=`TSLIKDSEIPKCGWWNQVAYYNACKWEEANVTFQCHRTQSQSGS
                     WIRTISSWKQRNRWEWRPDFESEKVKISLQCNSTRNLTFAMRSSSDYYDVQGAWIEFG
                     CHRNKSKRHSEARFRIRCKWNEGNNISLIDTCGTNPNVTGANPVDCTMKANTMYNCSL
                     QDSFTMKIEDLIVHFNMTKAVEMYNIAGNWSCTSDLPKGWGYMNCNCTNGTNNNNKMA
                     CPKNQG`
BASE COUNT      258 a     91 c    147 g    176 t
g    176 t"
walk		"FALSE"
sequence	"
gaaccaagtagcttattacaatgcttgtaaatgggaagaagctaatgtgacatttcagtg
tcacagaacacaaagtcaatcaggatcatggattaggacaatctcctcatggaaacaaag
aaatagatgggaatggaggccagactttgaaagtgagaaagtaaaaatatctttacaatg
taatagtacaaggaatttaacgtttgcaatgaggagttcaagtgattattatgatgtaca
aggagcatggatagaatttggatgtcataggaataaatcaaaaaggcactccgaggcgag
atttagaataagatgtaagtggaatgaaggaaataatatctcacttattgatacatgtgg
aacaaatccaaatgtcacaggagccaacccggtagactgtactatgaaggcaaatactat
gtacaattgctctttacaagatagttttactatgaaaatagaggacctaattgtacactt
taatatgacaaaagctgtggaaatgtataat"
}
{
name	"ItalyM2"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"X69501"
descrip		"Feline immunodeficiency virus (ItalyM2) env sequence."
creator		"Pistello,M."
offset		7338
creation-date	 6/ 3/96 16:22: 1
direction	1
strandedness	1
comments	"NID         g1359643KEYWORDS    env gene; surface glycoprotein; transmembrane protein.
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 675)
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-1992) M.A. Rigby, University of Glasgow, Dept
            Veterinary Pathology, Bearsden, Glasgow, G6I IQH, UK
  REMARK    Revised by [3]
REFERENCE   2  (bases 1 to 675)
            Neil,J.C.
  TITLE     Evolution of structural proteins of feline immunodeficiency virus:
            molecular epidemiology and evidence of selection for change
  JOURNAL   J. Gen. Virol. 74 (Pt 3), 425-436 (1993)
  MEDLINE   93187604
REFERENCE   3  (bases 1 to 675)
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAY-1996) M.Pistello, Virology Section and Retrovirus
            Center, Department of Biomedicine, University of Pisa, Via San
            Zeno, 35 I-56127 Pisa ITALY
FEATURES             Location/Qualifiers
     source          1..675
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /isolate=`ItalyM2`
                     /tissue_type=`peripheral blood mononuclear cells (PBMC)`
     CDS             <1..>675
                     /gene=`env`
                     /codon_start=1
                     /product=`surface glycoprotein`
                     /db_xref=`PID:e246051`
                     /db_xref=`PID:g1359644`
                     /translation=`TSLIKDSEIPKCGWWNQVAYYNACKWEEANVIFQCHRTQSQLGS
                     WIRTISSWKQRNRWEWRPDFESDKVKVSLQCNSTKNLTFAMRSSSDYYDVQGAWIEFG
                     CHRSKSKMHSEARFRIRCKWNEGNNISLIDTCGTNPNVTGANPVDCTMKANTMYNCSL
                     QDSFVMKIEDLIVHFNMTKAVEMYNIAGNWSCTSDLPKGWGYMNCNCTNGADDSKTKM
                     ACPENQG`
BASE COUNT      255 a     90 c    150 g    180 t"
sequence	"
gaaccaagtagcttattacaatgcttgcaaatgggaggaagctaatgtgatatttcagtg
tcacagaacacaaagtcaattaggatcatggattaggacaatctcctcatggaaacaaag
aaatagatgggaatggaggccagactttgaaagtgacaaagtaaaagtatcattacaatg
taatagtacaaaaaatttaacgtttgcaatgagaagttcaagtgattattatgatgtaca
aggagcatggatagaatttggatgtcataggagtaaatcaaagatgcactccgaggcaag
atttagaataagatgtaaatggaatgaaggaaacaatatctcacttattgatacatgtgg
gacaaatccaaatgtcacaggagccaacccggtagattgtactatgaaggcaaatactat
gtacaattgctctttacaagatagttttgttatgaaaatagaggaccttattgtacattt
taatatgacaaaagctgtggaaatgtataat"
}
{
name	"ItalyM3"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"X69502"
descrip		"Feline immunodeficiency virus (ItalyM3) env sequence."
creator		"Pistello,M."
offset		7338
creation-date	 6/19/96 16:22:11
direction	1
strandedness	1
comments	"NID         g1359645KEYWORDS    env gene; surface glycoprotein; transmembrane protein.
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 675)
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-1992) M.A. Rigby, University of Glasgow, Dept
            Veterinary Pathology, Bearsden, Glasgow, G6I IQH, UK
  REMARK    Revised by [3]
REFERENCE   2  (bases 1 to 675)
            Neil,J.C.
  TITLE     Evolution of structural proteins of feline immunodeficiency virus:
            molecular epidemiology and evidence of selection for change
  JOURNAL   J. Gen. Virol. 74 (Pt 3), 425-436 (1993)
  MEDLINE   93187604
REFERENCE   3  (bases 1 to 675)
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAY-1996) M.Pistello, Virology Section and Retrovirus
            Center, Department of Biomedicine, University of Pisa, Via San
            Zeno, 35 I-56127 Pisa ITALY
FEATURES             Location/Qualifiers
     source          1..675
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /isolate=`ItalyM3`
                     /tissue_type=`peripheral blood mononuclear cells (PBMC)`
     CDS             <1..>675
                     /gene=`env`
                     /codon_start=1
                     /product=`surface glycoprotein`
                     /db_xref=`PID:e244401`
                     /db_xref=`PID:g1359646`
                     /translation=`TTMIKDSEIPKCGWWNQEAYYNACKWEEADVTFQCRRTQSQKGS
                     WIRTISSWKQRNRWEWRPDFESENVKISLQCNSTKNLTFAMRSSSDYYDVQGAWIEFG
                     CHRTNSGRHSEARFRKRCKWNEGNNISLMYTCGTNQNVTRANPVDCTMRANTMYNCSL
                     QDSFTMKIEDLIEHFIMTKAVEMYNIAGNWSCTSDLPKGWGYMNCNCTNGSDSSNPKM
                     TCPKNQG`
BASE COUNT      263 a     95 c    147 g    170 t"
sequence	"
gaaccaagaagcttattacaatgcttgcaaatgggaagaagctgatgtgacatttcagtg
tcgcagaacacaaagtcaaaaaggatcatggattagaacaatctcctcatggaaacaaag
aaatagatgggaatggaggccagactttgaaagtgaaaatgtaaaaatatcattacaatg
taatagtacaaaaaatttaacgtttgcaatgagaagttcaagtgattattatgatgtaca
aggagcatggatagaatttggatgtcataggactaactcaggcaggcactccgaggcaag
atttagaaaaagatgtaaatggaatgaaggaaacaatatctcacttatgtatacatgtgg
gacaaatcaaaatgtcacaagagccaacccggtagattgcactatgagggcaaatactat
gtacaattgctctttacaagatagttttactatgaaaatagaggaccttattgaacattt
tattatgacaaaagctgtggaaatgtataat"
}
{
name	"USIL2489_7B"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U11820"
descrip		"Feline immunodeficiency virus USIL2489_7B gag polyprotein (gag)"
creator		"Sodora,D.L."
offset		7338
creation-date	10/ 1/96 17:33:10
direction	1
strandedness	1
comments	"gene, complete cds, polymerase polyprotein (pol) gene, partial cds,            vif protein (vif), complete cds, and envelope glycoprotein (env),
            complete cds, complete genome.
NID         g555797
KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 9462)
            Dow,S.W., Hoover,E.A. and Mullins,J.I.
  TITLE     Analysis of a feline immunodeficiency virus provirus reveals
            patterns of gene sequence conservation distinct from human
            immunodeficiency virus type 1
  JOURNAL   AIDS Res. Hum. Retroviruses 11 (4), 531-533 (1995)
  MEDLINE   95358914
REFERENCE   2  (bases 1 to 9462)
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUL-1994) Donald L. Sodora, Department Microbiology
            and Immunology, Stanford, University School of Medicine, Stanford,
            CA 94305-5402, USA
FEATURES             Location/Qualifiers
     source          1..9462
                     /organism=`Feline immunodeficiency virus`
                     /proviral
                     /strain=`USIL2489_7B`
                     /specific_host=`Felis domesticus`
                     /note=`defective virus`
                     /cell_type=`PBMC`
                     /tissue_type=`blood`
     LTR             1..361
     CDS             634..1983
                     /gene=`gag`
                     /codon_start=1
                     /product=`gag polyprotein`
                     /db_xref=`PID:g555798`
                     /translation=`MGNGQGRDWKMAIKRCNNVAVGVGTKSKKFGEGNFRWAIRMANV
                     TTGREPGDIPETLDQLRSIICDLQDRREQYGSSKEIDMAITTLKVFAVAGILNMTVST
                     ATAAENMYAQMGLDTRPSIKESGGKEEGPPQAYPIQTVNGAPQYVALDPKMVSIFMEK
                     AREGLGGEEVQLWFTAFSANLTSTDMATLIMSAPGCAADKEILDETLKQMTAEYDRTH
                     PPDGPRPLPYFTAAEIMGIGLTQEQQAEPRFAPARMQCRAWYLEALGKLAAIKAKSPR
                     AVQLKQGAKEDYSSFIDRLFAQIDQEQNTAEVKLYLKQSLSIANANPDCKRAMSHLKP
                     ESTLEEKLRACQEVGSPGYKMQLLAEALTRVQTVQTKGPRPVCFNCKKPGHLARQCKE
                     VKRCNNCGKPGHLAVNCWKGGRKISGNEKVGRAAAPVNQVQQMVPSAPPMEEKLLDL`
     CDS             <1875..5246
                     /gene=`pol`
                     /codon_start=1
                     /product=`polymerase`
                     /db_xref=`PID:g555799`
                     /translation=`EDLGKREGGASCSPSKPSAANGTICTSNGRETVRFINYNTMGTT
                     TTLERRLEIQIFVNGHPIKFLLDTGADITILNRKDFQIGNSIENGKQNMIGVGGGKRG
                     TNYINVHLEIRDENYRMQCIFGNVCVLEDNSLIQPLLGRDNMIKFNIRLVMAQISEKI
                     PIVKVRMRDPIQGPQVKQWPLSNEKIEALTDIVERLESEGKVKRADPNNPWNTPVFAI
                     KKKSGKWRMLIDFRVLNKLTDKGAEVQLGLPHPAGLQMKKQVTVLDIGDAYFTIPLDP
                     DYAPYTAFTLPRKNNAGPGRRYVWCSLPQGWVLSPLIYQSTLDNILQPFIKQNSELDI
                     YQYMDDIYIGSNLSKKEHKQKVEELRKLLLWWGFETPEDKLQEEPPYKWMGYELHPLT
                     WSIQQKQLEIPERPTLNELQKLAGKINWASQTIPDLSIKELTNMMRGDQKLDSIREWT
                     VEAKREVQKAKEAIEKQAQLNYYDPNRGLYAKLSLVGPHQICYQVYQKNPEHILWYGK
                     MNRQKKKAENTCDIALRACYKIREESIIRIGKEPMYEIPASREAWESNLIRSPYLKAP
                     PPEVEFIHAALSIKRALSMIQDAPITGAETWYIDGSRKQGKAARAAYWTDTGKWQIME
                     IEGSNQKAEVQALLLALKAGSEEMNIITDSQYILNIINQQPDLMEGLWQEVLEEMEKK
                     IAIFIDWVPGHKGIPGNEEVDKLCQTMMIIEGEGILDKRSEDAGYDLLAAQETHFLPG
                     EVRIVPTKTRIMLPKGHWGLIMGKSSIGSKGMDVLGGVIDEGYRGELGVIMINLTKKS
                     ITILEKQKVAQLIILPCRHESLQQGEIQMDSERGEKGFGSTGVFSSWVDRIEEAELNH
                     EKFHSDPQYLRTEFNLPRIVAEEIKRKCPLCRIRGEQVGGQLKIGPGIWQMDCTHFNG
                     KIIIVAVHVESGFLWAQIIPQETAECTVKALLQLICAHNVTELQTDNGPNFKNQKMEG
                     LLNYMGIKHKLGIPGNPQSQALVENANNTLKAWIQKFLPETTSLDNALALALHCLNFK
                     QRGRLGKMAPYELYIQQESLRIQDYFSQIPQKLMMQWVYYKDQKDKKWKGPMRVEYWG
                     QGSVLLKDEEKGYFLVPRRHIRRVPEPCTLPEGDE`
     CDS             5239..5994
                     /gene=`vif`
                     /codon_start=1
                     /product=`vif protein`
                     /db_xref=`PID:g555800`
                     /translation=`MSDEDWQVSRRLFAVLQGGIHSAMLYISSLPEMEQNKCKRSFKK
                     RLSDKETGFIFRLRKAEGIRWSFHTRDYYIGYVREMVAGSSLPDSLRLYVYISNPLWH
                     QSYRPGLTNFNTEWPFVNMWIKTGFMWDDIESQNICKGGEISHGWGPGMVGVVIKAFS
                     CGERKIKITPAMIIRGEIDPQKWCGDCWNLMCLKYSPPNTLQRLAMLARGKEAKEWRG
                     CCNQRFVSPFRTPCDLEVVQNKPKRNLLWTGEL`
     CDS             6269..8830
                     /gene=`env`
                     /codon_start=1
                     /product=`envelope glycoprotein`
                     /db_xref=`PID:g555801`
                     /translation=`MAEGGFTQNQQWIGPEEAEELLDFDIAVQMNEEGPLNPGVNPFR
                     VPGITSQEKDDYCKILQTKLRELKNEVKEVKIEEGNAGKLRRARYLRYSDENVLSIVY
                     LLIGYLRYLIDHRSLGSLRHDIDIETPQEEHYNNSEKGTTLNIKYEGRCCLSTFIMHL
                     ILFAGVGIWLGARAQVVWRLPPLVVPVDDTEMIFWDCWAPEEPACQDFLGTMIHLKAN
                     VNISIQEGPTLGNWAREIWSTLFKKATRQCRRGKIWRRWNETITGPLGCANNTCYNIS
                     VVVPDYQCYVDRVDTWLQGKVNISLCLTGGKMLYNKETRQLSYCTDPLQIPLINYTFG
                     PNQTCMWNASLIKDSEIPKCGWWNQAAYYNACKWEEANVTFQCHRTQSQSGSWIRTIS
                     SWRQRNRWEWRPDFESEKVKISLQCNSTKNLTFAMRSSSDYYDVQGAWIEFGCHRKKS
                     NKHSEARFRIRCTWNEGNNISLIDTCGTNPNVTGANPVDCTMKANVMYNCTLQDSFTM
                     KIEDLIVHFNMTKAVEMYNIAGNWSCTSDLPKGWGYMNCNCTNGTDNTKMTCPKNQGI
                     LRNWYNPVAGLRQALIKYQVVKQPEYLIVPEEVMQYKVKQKRAAIHIMLALATVLSMA
                     GAGTGATAIGMVTQYHQVLATHQQALDKITEALKINNLRLITLEHQVLVIGLKVEAIE
                     KFLYTAFAMQELGCNQNQFFCKIPPSLWSMYNMTLNQTIWNHGNISLGNWYNQTKDLQ
                     NKFYEIIMDIEQNNVQGKTGIQQLQKWENWVGWIGKIPQYLKGLLGSVLGIGLGILLL
                     LICLPTLVDCIRSCTNRILGYTVIAMPEIDDEEVHLSVELRRNGRQCGISEKEEE`
     LTR             9002..9462
BASE COUNT     3499 a   1436 c   2143 g   2384 t

g   2384 t"
sequence	"
gaaccaagcagcttattacaatgcgtgtaaatgggaagaagctaatgtgacatttcagtg
tcacagaacacaaagtcaatcaggatcatggattaggacaatctcctcatggagacaaag
aaatagatgggaatggaggccagactttgaaagtgagaaagtaaaaatatcattacaatg
taatagtacaaaaaatttaacgtttgcaatgagaagttcaagtgattattatgatgtaca
aggagcatggatagaatttggatgtcacaggaaaaaatcaaataagcactccgaggcaag
atttagaataagatgtacatggaatgaaggaaataatatctcacttattgatacatgtgg
gacaaatccaaatgtcacaggagccaacccggtagattgtactatgaaggcaaatgttat
gtacaattgcactttacaagatagttttactatgaaaatagaggaccttattgtacactt
taatatgacaaaagctgtggaaatgtataat"
}
{
name	"USIL2517_2"
type		"DNA"
sequence-ID	"valis:81:801177421"
descrip		"FIV2517_2, 2082 bases, 4B1 checksum."
offset		7338
creation-date	 5/24/95 16:44:26
direction	1
strandedness	1
comments	""
walk		"FALSE"
sequence	"
gaaccaagtagcttattacaatgcttgtaaatgggaagaagctaatgtgacatttcagtg
tcacagaacacaaagtcaatcaggatcatggattaggacaatctcctcatggaaacaaag
aaatagatgggaatggaggccagactttgaaagtgagaaagtaaaaatatcattacaatg
taatagtacaaaaaAtttaacgtttgcaatgagaagttcaagtgattattatgatgtaca
aggagcatggatagaatttggatgtcatagaaataaatcaaaaaaacactccgcggcaag
atttagaataagatgtagatggaatgaaggaaataatatctcacttattgatacatgtgg
gacaaatccaaatgtcacaggagccaacccggtagattgtactatgaaggcaaatactat
gtacaattgctctttacaagatagttttactatgaaaatagaggaccttattgtacactt
taatatgacaaaagctgtggaaatgtataat"
}
{
name	"Sendai2"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"D37814"
descrip		"Feline immunodeficiency virus gene for envelope polyprotein."
creator		"Kakinuma,S., Motokawa,K., Hohda"
offset		7338
creation-date	 6/ 9/95  9:32:28
direction	1
strandedness	1
comments	"
(FIV-6).NID         g840676
KEYWORDS    .
SOURCE      Feline immunodeficiency virus (individual_isolate Sendai 2, ) RNA.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 2568)
  JOURNAL   Unpublished (1995)
REFERENCE   2  (sites)
            Hashimoto,H.
  TITLE     Nucleotide sequence of feline immunodeficiency virus:
            classification of Japanese isolates into two subtypes which are
            distinct from non-Japanese subtypes
  JOURNAL   J. Virol. 69 (6), 3639-3646 (1995)
  MEDLINE   95264455
COMMENT     Submitted (01-Aug-1994) to DDBJ by:
            Shizuko Kakinuma
            Department of Immunology
            Center for Basic Research
            The Kitasato Institute
            5-9-1 Shirokane, Minato-ku
            Tokyo 108
            Japan
            Phone: 03-3444-6161 x2109
            Email: skakinum@ddbj.nig.ac.jp
            Fax:   03-3444-6637.
            NCBI gi: 840676
FEATURES             Location/Qualifiers
     source          1..2568
                     /organism=`Feline immunodeficiency virus`
                     /isolate=`Sendai 2`
                     /proviral
                     /sequenced_mol=`RNA`
     CDS             1..2568
                     /gene=`env`
                     /note=`NCBI gi: 840677`
                     /codon_start=1
                     /product=`envelope polyprotein`
                     /db_xref=`PID:g840677`
                     /translation=`MAEGGFTQNQQWIGPEEAEELLDFDIAVQMNEEGPLNPGVNPFR
                     VPGITSQEKEDYCKTLQTNLQELKNEVKEVKIEEGNAGKFRRARFLRYSDENVLSIVY
                     LLIGYLRYLIDHRSLGSLRHDIDIEAPQEEHYNNSEKGTTLNIKYARRCCISTFIMYL
                     ILFAGVGIWLGARAQVVWRLPPLVVPVDDTEIIFWDCWAPEEPACQDFLGTMVQLKAS
                     INIGIQEGPTLGHWAREIWSTLFKKATRQCRRGRVWRRWNETITGPLGCANNTCYNIS
                     VVVPDYQCYVDRVDTWLQGRINISLCLTGGKMLYNKDTHQLSYCTEPLQIPLINCTFG
                     PIQTCMWNTSLIQDPEIPKCGWWTQVAYYNNCKWEEANVTFQCHRTQSRSGSWLRTIS
                     SWRQRNRWEWRPDFESEKVKISLQCNSTKNLTFAMRSSSDYYDVQGAWIEFGCHRNKS
                     KKHSEARFRIRCKWNEGNNISLIDTCGTNPNVTGANPVDCTMKANTMYNCSLQDSFTM
                     KIEDLIVHFNMTKAVEMYNIAGNWSCTSDLPKGWGYMNCNCTNGTDDSKTKMACPENQ
                     GILRNWYNPVAGLRQALIKYQVVKQPEYLIVPEEVMQYKVKQKRAAIHIMLALATVLS
                     MAGAGTGATAIGMVTQYHQVLATHQQALDKITEALKINNLRLITLEHQVLVIGLKVEA
                     IEKFLYTAFAMQELGCNQNQFFCKIPPSLWSMYNMTLNQTIWNHGNISLGNWYNQTRD
                     LQNKFYEIIMDIEQNNVQGKTGIQQLQKWENWVGWIGKIPQYLKGLLGSVLGIGLGIL
                     LLLICLPTLVDCIRNCTNKILGYTVIAMPEIDDEEVHLSVELRRNGRQCGISEKEEE`
BASE COUNT      957 a    358 c    572 g    681 t"
walk		"FALSE"
sequence	"
gacccaagtagcctattataacaattgtaaatgggaagaagcaaatgtgacatttcagtg
tcacagaacacaaagccgatcaggatcatggttaaggacaatctcctcatggagacaaag
aaatagatgggaatggaggccggactttgaaagtgagaaagtaaaaatatcattacaatg
taatagcacaaaaaacttaacgtttgcaatgagaagttcaagtgattattatgatgtaca
aggagcatggatagaatttggatgtcataggaataaatcaaaaaagcactccgaggcaag
atttagaataagatgtaaatggaatgaaggaaataatatctcacttattgatacatgtgg
gacaaatccaaatgtcacaggagccaacccggtagattgtactatgaaggcaaacactat
gtacaattgctctttacaagatagttttactatgaaaatagaggaccttattgtacattt
taatatgacaaaagctgtggaaatgtataat"
}
{
name	"JapanTM2"
type		"DNA"
sequence-ID	"valis:80:801177421"
descrip		"FIVGVEPX, 2082 bases, 1F3B checksum."
offset		7338
creation-date	 5/24/95 16:44:26
direction	1
strandedness	1
walk		"FALSE"
sequence	"
gaaccaagtagcttattacgatacttgtaaatgggaagaagctaatgtgacatttcagtg
tcacagaacacaaagtcaatcaggatcatggattagaacaatctcctcatggaaacaaag
aaatagatgggaatggaggccagactttgaaagtgagaaagtaaaaatatcattacaatg
taatagtacaaaaaacttaacgtttgcaatgagaagttcaagtgattattatgatgtaca
aggagcatggatagaatttggatgtcataggaataaatcaaaaaggcactccgaggcaag
atttagaataagatgtaaatggaatgaaggaaataatatctcacttattgatacgtgtgg
gacaaatccaaatgtcacaggagccaacccggtagattgtactatgaaggcaaacactat
gtacaattgctctttacaagatagttttactatgaaaatagaggatcttattgtacattt
taatatgacaaaagctgtggaattgtataat"
}
{
name	"Aomori2"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"D37817"
descrip		"Feline immunodeficiency virus gene for envelope polyprotein."
creator		"Kakinuma,S., Motokawa,K., Hohda"
offset		7338
creation-date	 7/25/95  9:32:28
direction	1
strandedness	1
comments	"
(FIV-9).NID         g840684
KEYWORDS    .
SOURCE      Feline immunodeficiency virus (individual_isolate Aomori 2, ) RNA.
            Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
            Retroviridae; Lentivirinae.
REFERENCE   1  (bases 1 to 2568)
  JOURNAL   Unpublished (1995)
REFERENCE   2  (sites)
            Hashimoto,H.
  TITLE     Nucleotide sequence of feline immunodeficiency virus:
            classification of Japanese isolates into two subtypes which are
            distinct from non-Japanese subtypes
  JOURNAL   J. Virol. 69 (6), 3639-3646 (1995)
  MEDLINE   95264455
COMMENT     Submitted (01-Aug-1994) to DDBJ by:
            Shizuko Kakinuma
            Department of Immunology
            Center for Basic Research
            The Kitasato Institute
            5-9-1 Shirokane, Minato-ku
            Tokyo 108
            Japan
            Phone: 03-3444-6161 x2109
            Email: skakinum@ddbj.nig.ac.jp
            Fax:   03-3444-6637.
            NCBI gi: 840684
FEATURES             Location/Qualifiers
     source          1..2568
                     /organism=`Feline immunodeficiency virus`
                     /isolate=`Aomori 2`
                     /proviral
                     /sequenced_mol=`RNA`
     CDS             1..2568
                     /gene=`env`
                     /note=`NCBI gi: 840685`
                     /codon_start=1
                     /product=`envelope polyprotein`
                     /db_xref=`PID:g840685`
                     /translation=`MAEGGFTQNQQWIGPEEAEELLDFDIAVQMNEEGPLNPGVNPFR
                     VPGITSQEKDDYCKVLQTKLQELKNEVKEVKIEEGNAGKFRRARYLRYSDENVLSIVY
                     LLIGYLRYLIDHRSLGSLRHDIDIETPQEEHYNNSEKGTTLNTKYGRRCCLSTFIMYL
                     VLFAGVGLWLGARAQVVWRLPPLVVPVDDTEIIFWDCWAPEEPACQDFLGTMIYLKAN
                     VNISIQEGPTLGNWAREIWSTLFKKATRQCRRGRIWKRWNETITGPLGCATNTCYNIS
                     VVVPDYQCYVDRVDTWLQGKVNISLCLTGGKMLYNKETRQLSYCTDPLQIPLINYTFG
                     PNQTCMWNTSLIKDSEIPKCGWWNQVAYYNACKWEEANVTFQCQRTQSQSGSWIRTIS
                     SWKQRNRWEWRPDFESEKVKISLQCNSTKNLTFAMRSSSDYYDVQGAWIEFGCHRNKS
                     KKYSEARFRIRCKWNEGKNISLIDTCGTNPNVTGANPVDCTMKANTMYNCSLQDSFTM
                     KIEDLIVHFNMTKAVEMYNIAGNWSCTSDLPKGWGYMNCNCTNGTDNSETKMTCPENQ
                     GILRNWYNPVAGLRQALIKYQVVKQPEYLIVPEEVMQYKFKQKRAAIHIMLALATVLS
                     MAGAGTGATAIGMVTQYHQVLATHQQALEKITEALKINNLRLITLEHQVLVIGLKVEA
                     IEKFLYTAFAMQELGCHQNQFFCKIPPSLWSMYNMTLNQTIWNHGNISLGNWYNQTRD
                     LQNKFYEIIMDIEQNNVQGKTGIQQLQKWENWMGWIGKIPQYLKGLLGSVLGIGLGIL
                     LLLICLPTLVDCIRNCTNKILGYTVIAMPEIDDEEVHLSVELRRNGRQCGISEKEEE`
BASE COUNT      973 a    341 c    561 g    693 t"
walk		"FALSE"
sequence	"
gaatcaagtagcttattacaatgcttgtaaatgggaggaagctaatgtgacatttcagtg
tcaaagaacacaaagtcaatcaggatcgtggattaggacaatctcctcatggaaacaaag
aaatagatgggaatggaggccagactttgaaagtgagaaagtaaaaatatcattacaatg
taatagtacaaaaaacttaacgtttgcaatgagaagttcaagtgattattatgatgtaca
aggagcatggatagaatttggatgtcacaggaataaatcaaaaaagtactccgaggcaag
atttagaataagatgtaaatggaatgaaggaaaaaatatctcacttattgatacatgtgg
gacaaatccaaatgtcacaggagctaacccggtagattgtactatgaaggcaaacactat
gtacaattgctctttacaagatagttttactatgaaaatagaggaccttattgtacattt
taatatgacaaaggctgtggaaatgtataat"
}
{
name	"USOKlgrl02B"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"U02421"
descrip		"Feline immunodeficiency virus USOKlgrl02B gp100 (env) gene, partial"
creator		"Sodora,D.L."
offset		7338
creation-date	 5/13/94 18:33:30
direction	1
strandedness	1
comments	"
cds.KEYWORDS    .
SOURCE      Feline immunodeficiency virus.
            Viridae; Viruses; Retroviridae; Lentivirus.
REFERENCE   1  (bases 1 to 675)
            Mullins,J.I.
  TITLE     Identification of three feline immunodeficiency virus (FIV) env
            gene subtypes and comparison of the FIV and human immunodeficiency
            virus type I evolutionary patterns
  JOURNAL   J. Virol. 68, 2230-2238 (1994)
  STANDARD  full automatic
REFERENCE   2  (bases 1 to 675)
  TITLE     Direct Submission
  JOURNAL   Submitted (05-OCT-1993) Donald L. Sodora, Department Microbiology
            and Immunology, Stanford University School of Medicine, Stanford,
            CA 94305-5402, USA
  STANDARD  full automatic
COMMENT     NCBI gi: 458003
FEATURES             Location/Qualifiers
     source          1..675
                     /strain=`USOKlgrl02B`
                     /organism=`Feline immunodeficiency virus`
                     /specific_host=`Felis domesticus`
                     /proviral
     CDS             <1..>675
                     /gene=`env (V3-V5)`
                     /note=`NCBI gi: 458004`
                     /codon_start=1
                     /product=`gp100`
                     /translation=`TSLIKDSEIPKCGWWNQAAYYNACKWEEANVKFQCQRKQSQPGS
                     WKRIISSWRQKNRWEWRPDFESEKVKISLQCNSTKNLTFAMRSSGDYYDVQGAWIEFG
                     CHRNKSKQYSEARFRIRCKWNEGNNISLIDTCGTNPNVTRANPVDCTMKANTMYNCSL
                     QDSFTMKIEDLIVHFNMTKAVEMYNIAGNWSCTSDLPKGWGYMNCNCTNGTDNSGPKM
                     TCPKNQG`
BASE COUNT      263 a     89 c    146 g    177 t
g    177 t"
walk		"FALSE"
sequence	"
gaaccaagcagcttattataatgcttgtaaatgggaagaagctaatgtaaaatttcagtg
tcaaagaaaacaaagtcaacctggatcatggaagaggataatctcctcatggagacaaaa
gaatagatgggaatggaggccagactttgaaagtgaaaaagtaaaaatatcattacaatg
taatagtacaaaaaatttaacgtttgcaatgagaagttcaggtgattattatgatgtaca
aggagcttggatagaatttggatgtcataggaataaatcaaaacagtactccgaagcaag
gtttagaataaggtgtaaatggaatgaaggaaataatatctcacttattgatacatgtgg
gacaaatccaaatgtcacaagagccaacccggtagactgtactatgaaggcaaatactat
gtacaattgctctttacaagatagttttactatgaaaatagaggaccttattgtacactt
taatatgacaaaagctgtggaaatgtataat"
}
{
name	"Aomori1"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"D37816"
descrip		"Feline immunodeficiency virus gene for envelope polyprotein."
creator		"Kakinuma,S., Motokawa,K., Hohda"
offset		7338
creation-date	 6/ 9/95  9:32:28
direction	1
strandedness	1
comments	"
(FIV-8).NID         g840682
KEYWORDS    .
SOURCE      Feline immunodeficiency virus (individual_isolate Aomori 1, ) RNA.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 2568)
  JOURNAL   Unpublished (1995)
REFERENCE   2  (sites)
            Hashimoto,H.
  TITLE     Nucleotide sequence of feline immunodeficiency virus:
            classification of Japanese isolates into two subtypes which are
            distinct from non-Japanese subtypes
  JOURNAL   J. Virol. 69 (6), 3639-3646 (1995)
  MEDLINE   95264455
COMMENT     Submitted (01-Aug-1994) to DDBJ by:
            Shizuko Kakinuma
            Department of Immunology
            Center for Basic Research
            The Kitasato Institute
            5-9-1 Shirokane, Minato-ku
            Tokyo 108
            Japan
            Phone: 03-3444-6161 x2109
            Email: skakinum@ddbj.nig.ac.jp
            Fax:   03-3444-6637.
            NCBI gi: 840682
FEATURES             Location/Qualifiers
     source          1..2568
                     /organism=`Feline immunodeficiency virus`
                     /isolate=`Aomori 1`
                     /proviral
                     /sequenced_mol=`RNA`
     CDS             1..2568
                     /gene=`env`
                     /note=`NCBI gi: 840683`
                     /codon_start=1
                     /product=`envelope polyprotein`
                     /db_xref=`PID:g840683`
                     /translation=`MAEGGFTQNQQWIGPEEAEELLDFDIAVQMNEEGPLNPGVNPFR
                     VPGITSQEKEDYCKILQTKLQELKNEVKGVKIEEGNAGKFRRARYLRYSDENVLSIVY
                     LLIGYLRYLIDHRSLGSLRHDIDIETPQEEHFNNSEKGTTLNTKYGRRCCLSTFIMNL
                     ILFAGVGIWLGARAQVVWRLPPLVVPVDDTEIIFWDCWAPEEPACQDFLGTMVQLKAS
                     INISIQEGPTLGHWAREILETLFKKATRQCRRGRVWRRWNETITGPLGCANNACYNIS
                     VVVPDYQCYVDRVDTWLQGRINISLCLTGGKMLYNKDTQQLSYCTEPLQIPLINYTFG
                     PNQTCMWNTSLIEDSEIPKCGWWNQAAYYNSCKWEQTDVKFQCQRTQSQPGTWLRAIA
                     SWEQANRWIWRPDFESDKVKISLQCNSTKNLTFAMRSSSDYYDVQGAWIEFGCHRNKS
                     RRHSEARFRIRCKWNEGKNISLIDTCGTNPNVTGANPVDCTMKANTMYNCSLQDSFTM
                     KIEDLIVHFNMTKAVEMYNIAGNWSCTSDLPKGWGYMNCNCTNGTDDSKTKMACPENQ
                     GILRNWYNPVAGLRQALIKYHVVKQPEYLIVPEEVMQYKVKQKRAAIHIMLALATVLS
                     MAGAGTGATAIGMVTQYHQVLATHQQALDKITEALKINNLRLITLEHQVLVIGLKVEA
                     IEKFLYTAFAMQELGCNQNQFFCKIPPSLWSMYNMTLNQTIWNHGNISLGNWYNQTRD
                     LQNKFYEIIMDIEQNNVQGKTGIQQLQKWENWMGWIGKIPQYLKGLLGSVLGIGLGIL
                     LLLICLPTLVDCIRNCTNKILGYTVIAMPEIDDEEVHLSVELRRNGRQCGISEKEEE`
BASE COUNT      960 a    347 c    578 g    683 t"
walk		"FALSE"
sequence	"
gaatcaggcagcttattataatagctgtaaatgggaacagactgatgtgaaatttcagtg
tcaaagaacacaaagtcaaccaggaacatggcttagggcaattgcttcatgggaacaggc
aaatagatggatatggaggccagactttgaaagtgacaaagtgaaaatatcattacagtg
caatagtacaaaaaatttaacgtttgcaatgagaagttcaagtgattattatgatgtaca
aggagcatggatagaatttggatgtcataggaataaatcaagaaggcactccgaggcaag
atttagaataagatgtaaatggaatgaaggaaaaaatatctcacttattgatacatgtgg
gacaaatccaaatgtcacaggagctaacccggtagattgtactatgaaggcaaacactat
gtacaattgctctttacaagatagttttactatgaaaatagaggaccttattgtacattt
taatatgacaaaagctgtggaaatgtataat"
}
{
name	"Yokohama"
type		"DNA"
longname	Feline immunodeficiency virus
sequence-ID	"D37812"
descrip		"Feline immunodeficiency virus gene for envelope polyprotein."
creator		"Kakinuma,S., Motokawa,K., Hohda"
offset		7338
creation-date	 6/ 9/95  9:32:28
direction	1
strandedness	1
comments	"
(FIV-4).NID         g840680
KEYWORDS    .
SOURCE      Feline immunodeficiency virus (individual_isolate Yokohama, ) RNA.
            Viruses; Retroid viruses; Retroviridae; Lentivirus; Feline
            lentiviruses.
REFERENCE   1  (bases 1 to 2568)
  JOURNAL   Unpublished (1995)
REFERENCE   2  (sites)
            Hashimoto,H.
  TITLE     Nucleotide sequence of feline immunodeficiency virus:
            classification of Japanese isolates into two subtypes which are
            distinct from non-Japanese subtypes
  JOURNAL   J. Virol. 69 (6), 3639-3646 (1995)
  MEDLINE   95264455
COMMENT     Submitted (01-Aug-1994) to DDBJ by:
            Shizuko Kakinuma
            Department of Immunology
            Center for Basic Research
            The Kitasato Institute
            5-9-1 Shirokane, Minato-ku
            Tokyo 108
            Japan
            Phone: 03-3444-6161 x2109
            Email: skakinum@ddbj.nig.ac.jp
            Fax:   03-3444-6637.
            NCBI gi: 840680
FEATURES             Location/Qualifiers
     source          1..2568
                     /organism=`Feline immunodeficiency virus`
                     /isolate=`Yokohama`
                     /proviral
                     /sequenced_mol=`RNA`
     CDS             1..2568
                     /gene=`env`
                     /note=`NCBI gi: 840681`
                     /codon_start=1
                     /product=`envelope polyprotein`
                     /db_xref=`PID:g840681`
                     /translation=`MAEGGFTQNHQWIGPEEAEELLDFDIAIQMNEEGPLNPGVNPFR
                     VPGITSQEKDDYCKILQTKLQELKNEVKEVKIEEGNAGKFRRARFLRYSDENVLSIVY
                     LLIGYLRYLIDHRSLGSLRHDIDIEAPQEEHYNNSEKGTTLNIKYGRRCCISTFIMYL
                     ILFAGVGIWFGARAQVVWRLPPLVVPVDDTEIIFWDCWAPEEPACQDFLGTMIHLKAK
                     TNISIQEGPTLGNWAREIWATLFKKATRQCRRGRIWRRWNETITGPLGCANNTCYNIS
                     VVVPDYQCYLDRVDTWLQGKLNISLCLTGGKMLYNKVTKQLSYCTDPLQIPLINYTFG
                     PNQTCMWNTSQIQDPEIPKCGWWNQMAYYNSCKWEEAKVKFHCQRTQSQPGSWHRAIS
                     SWKQRNRWEWRPDFKSKKVKISLQCNSTKNLTFAMRSSSDYYDVQGAWIEFGCHRNKS
                     KGFSEARFRTRCKWNEGNNISLIDTCGTNPNVTGANPVDCTMKANIMYNCSLQDSFTM
                     KIEDLIVHFNMTKAVEMYNIAGNWSCTSDLPKGWGYMNCNCTNGTDNSKTKMACPRNQ
                     GILRNWYNPVAGLRQALIKYQVVKQPEYLIVPEEVMQYKVKQKRAAIHIMLALATVLS
                     MAGAGTGATAIGMVTQYHQVLATHQHALDKITEALKINNLRLITLVHQVLVIGLKVRA
                     IEKPLYTAFAMQELGCNQNQFFCKIPPSLWSMYNMTLNQTIWNHGNISLGNWYNQTRD
                     LQNKFYEIIMDIEQNNVQGKTGIQQLQKWENWVGWIGKIPQYLKGLLGSVLGIGLGIL
                     LLLICLPTLVDCIRNCTHKILGYTVIAMPEIDDEEVHLSVELRRNGRQCGISEKEEE`
BASE COUNT      968 a    362 c    567 g    671 t"
walk		"FALSE"
sequence	"
gaatcaaatggcctattataacagttgtaaatgggaagaggcaaaggtaaagtttcattg
tcaaagaacacagagtcagcctggatcatggcatagagcaatctcgtcatggaaacaaag
aaatagatgggagtggagaccagattttaaaagtaaaaaggtgaaaatatctctacagtg
caatagcacaaaaaacctaacgtttgcaatgagaagctcaagtgattattatgatgtaca
aggggcatggatagaatttggatgccataggaataaatcaaaagggttctccgaggcaag
atttagaacaagatgtaaatggaatgaaggaaataatatctcacttattgatacatgtgg
gacaaatccaaatgtcacaggagccaacccggtagattgtactatgaaggcaaacattat
gtacaattgctctttacaagatagttttactatgaaaatagaggaccttattgtacattt
taatatgacaaaagctgtggaaatgtataat"
}