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University
of Washington School
of Medicine, Department
of Microbiology
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| PISE
Web Interfaces for Molecular Biology Programs |
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PISE,
Features include:
- results are given on the Web or by email
- programs are interconnected: you can use the
results of one program as input to another one by a
simple click
- these interfaces are easy to design (a few hours)
- redundant submissions are detected
- sequences are automatically converted in the right
format
The Web server interfaces are meant to be run on any
Unix machine.
The current operational server contains about 200
programs, ranging from Blast
and Fasta
databases searches or classic comparison
programs (e.g., clustalw, Wise, ...) to gene
finding and modelling (Genscan, GeneMark, ...), RNA
analysis (mfold, Vienna package), phylogeny
(Phylip, fastDNAml, Puzzle, Molphy, ...), protein
and DNA
analysis, pattern
discovery (HMMER, PFTOOLS, ...) and structure
analysis.
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| Sequence
Database Searching (using sequence data) |
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| Sequence
Database Searching (for text) |
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- Entrez
- GenBank
Query at Indiana University
- Retrovirus
Resources at NCBI
- HIV
Database Search Tool from Los Alamos National Lab. This search tool allows
for specification of searchs by a number of parameters (Accession Number,
Subtype, Sequence name, Sampling country, Infection country, Sampling
year, Infection year, Sequence length, Patient code, Risk factor,
Coreceptor usage, Phenotype, Author, Geographic region)
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Disclaimer:
Inclusion of any of these sites does not imply
endorsement of the service or software provided therein.
Please suggest additional sites to me.
Back
to Mullins Lab Home Page
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