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Supplement S3.
Comparison of regulated gene signatures in HIV-1BRU infections of CD4+ T cell-lines.
Table depicts numbers of regulated genes (P<=0.005) for each cell line, number of common- and anti-regulated
genes for each comparison and correlation coefficient (R) for either all observations or the genes in the
common signature. * Anti-correlated gene names listed in table below.
| Compare |
Query |
Target |
Common |
Anti |
R all |
R common |
| CEM#1-CEM#2 |
361 |
616 |
224 |
4 |
0.922 |
0.992 |
| CEM#1-CEM#3 |
341 |
290 |
121 |
1 |
0.891 |
0.994 |
| CEM#2-CEM#3 |
574 |
290 |
161 |
2 |
0.871 |
0.992 |
| CEM HI-CEM#1 |
274 |
361 |
121 |
1 |
0.941 |
0.997 |
| CEM HI-CEM#2 |
274 |
616 |
152 |
4 |
0.910 |
0.991 |
| CEM HI-CEM#3 |
256 |
290 |
99 |
0 |
0.903 |
0.997 |
| CEM#2-CEMss |
616 |
257 |
141 |
2* |
0.858 |
0.985 |
| CEM#2-CEMfh |
616 |
378 |
209 |
0 |
0.866 |
0.980 |
| CEM#2-Jurkat |
616 |
440 |
156 |
15* |
0.704 |
0.960 |
| CEM#2-SupT1 |
616 |
447 |
179 |
6* |
0.716 |
0.963 |
| CEMss-CEMfh |
257 |
378 |
156 |
0 |
0.903 |
0.579 |
| CEMss-Jurkat |
257 |
440 |
68 |
4* |
0.676 |
0.984 |
| CEMss-SupT1 |
257 |
447 |
95 |
2 |
0.716 |
0.985 |
| CEMfh-Jurkat |
378 |
440 |
102 |
5* |
0.688 |
0.971 |
| CEMfh-SupT1 |
378 |
447 |
133 |
5* |
0.726 |
0.966 |
| Jurkat-SupT1 |
440 |
447 |
129 |
7* |
0.602 |
0.957 |
| Compare |
Anti-correlated genes |
| CEM#2-CEMss |
HSU79266, STE |
| CEM#2-Jurkat |
GCKR, RPML3, RCN2, H2AFL, PX19, BCL2A1, PPP1CA, MCM3, MYBL2, TCF7, EST_131877, BIRC3, ELAVL1, ACVR1, ACTB |
| CEM#2-SupT1 |
SLA, EGR1, PTPRA, STRAIT11499, SCAMP3, LOC51299 |
| CEMss-Jurkat |
RPML3, GBP1, PCYT2, TCF7 |
| CEMfh-Jurkat |
XRCC1, DTYMK, RPML3, CD5, TCF7 |
| CEMss-SupT1 |
PRKACA, STRAIT11499 |
| CEMfh-SupT1 |
EST_120823, EST_139962, STRAIT11499, IGF2, GALNT2 |
| Jurkat-SupT1 |
OPRK1, BRF2, EGR1, STRAIT11499, BCL2A1, TCF7, CXCR4 |
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