Sequence

Full Sequence Name

Accession number

Cohort^a

Date of Isolation (yr)

Country

Reference

A1Q23 17

A1.KE.94.Q23_17

AF004885

1994

Kenya

Neilson et al., 1999, (19)

A294CY017

A2.CY.94.94CY017_41

AF286237

1994

Cyprus

Gao et al., 2001, (8)

BHXB2

B.FR.83.HXB2

K03455

1983

France

Ratner et al., 1985, (26)

DELI

D.CD.83.ELI

K03454

1983

Dem. Rep. of Congo

Alizon et al., 1986, (1)

F193BR020

F1.BR.93.93BR020_1

AF005494

1993

Brazil

Gao et al., 1998, (7)

F2MP257

F2.CM.95.MP257

AJ249237

1995

Cameroon

Triques et al., 2000, (32)

GDRCBL

G.BE.96.DRCBL

AF084936

1996

Belgium

Oelrichs et al., 1999, (22)

HVI991

H.BE.93.VI991

AF190127

1993

Belgium

Janssens et al., 2000, (13)

JSE7022

J.SE.94.SE7022

AF082395

1994

Sweden

Laukkanen et al., 1999, (15)

KEQTB11C

K.CD.97.EQTB11C

AJ249235

1997

Dem. Rep. of Congo

Triques et al., 2000, (32)

00BW07621

C.BW.00.00BW07621

AF443088

2000

Botswana

Novitsky et al., 2002, (20)

00BW076820

C.BW.00.00BW076820

AF443089

2000

Botswana

Novitsky et al., 2002, (20)

00BW087421

C.BW.00.00BW087421

AF443090

2000

Botswana

Novitsky et al., 2002, (20)

00BW147127

C.BW.00.00BW147127

AF443091

2000

Botswana

Novitsky et al., 2002, (20)

00BW16162

C.BW.00.00BW16162

AF443092

2000

Botswana

Novitsky et al., 2002, (20)

00BW1686

C.BW.00.00BW1686

AF443093

2000

Botswana

Novitsky et al., 2002, (20)

00BW17593

C.BW.00.00BW17593

AF443094

2000

Botswana

Novitsky et al., 2002, (20)

00BW17732

C.BW.00.00BW17732

AF443095

2000

Botswana

Novitsky et al., 2002, (20)

00BW17835

C.BW.00.00BW17835

AF443096

2000

Botswana

Novitsky et al., 2002, (20)

00BW17956

C.BW.00.00BW17956

AF443097

2000

Botswana

Novitsky et al., 2002, (20)

00BW18113

C.BW.00.00BW18113

AF443098

2000

Botswana

Novitsky et al., 2002, (20)

00BW18595

C.BW.00.00BW18595

AF443099

2000

Botswana

Novitsky et al., 2002, (20)

00BW18802

C.BW.00.00BW18802

AF443100

2000

Botswana

Novitsky et al., 2002, (20)

00BW192113

C.BW.00.00BW192113

AF443101

2000

Botswana

Novitsky et al., 2002, (20)

00BW20361

C.BW.00.00BW20361

AF443102

2000

Botswana

Novitsky et al., 2002, (20)

00BW20636

C.BW.00.00BW20636

AF443103

2000

Botswana

Novitsky et al., 2002, (20)

00BW20872

C.BW.00.00BW20872

AF443104

2000

Botswana

Novitsky et al., 2002, (20)

00BW212721

C.BW.00.00BW2127214

AF443105

2000

Botswana

Novitsky et al., 2002, (20)

00BW21283

C.BW.00.00BW21283

AF443106

2000

Botswana

Novitsky et al., 2002, (20)

00BW22767

C.BW.00.00BW22767

AF443107

2000

Botswana

Novitsky et al., 2002, (20)

00BW38193

C.BW.00.00BW38193

AF443108

2000

Botswana

Novitsky et al., 2002, (20)

00BW38428

C.BW.00.00BW38428

AF443109

2000

Botswana

Novitsky et al., 2002, (20)

00BW38713

C.BW.00.00BW38713

AF443110

2000

Botswana

Novitsky et al., 2002, (20)

00BW3876 9

C.BW.00.00BW3876_9

AF443111

2000

Botswana

Novitsky et al., 2002, (20)

00BW3886 8

C.BW.00.00BW3886_8

AF443112

2000

Botswana

Novitsky et al., 2002, (20)

00BW3891 6

C.BW.00.00BW3891_6

AF443113

2000

Botswana

Novitsky et al., 2002, (20)

00BW3970 2

C.BW.00.00BW3970_2

AF443114

2000

Botswana

Novitsky et al., 2002, (20)

00BW5031 1

C.BW.00.00BW5031_1

AF443115

2000

Botswana

Novitsky et al., 2002, (20)

01IN565 10

C.IN.99.01IN565_10

AY049708

2001

India

Khurana et al., unpubl.^c

01ZATM45

C.ZA.01.01ZATM45

AY228557

2001

South Africa

Papathanasopoulos et al., 2003, (25)

02YE511

C.YE.02.02YE511

AY795906

2002

Yemen

Saad et al., 2005, (29)

04BR013

C.BR.04.04BR013

AY727522

2004

Brazil

Sanabani et al., 2006, (31)

04BR021

C.BR.04.04BR021

AY727523

2004

Brazil

Sanabani et al., 2006, (31)

04BR038

C.BR.04.04BR038

AY727524

2004

Brazil

Sanabani et al., 2006, (31)

04BR073

C.BR.04.04BR073

AY727525

2004

Brazil

Sanabani et al., 2006, (31)

04BR137

C.BR.04.04BR137

AY727526

2004

Brazil

Sanabani et al., 2006, (31)

04BR142

C.BR.04.04BR142

AY727527

2004

Brazil

Sanabani et al., 2006, (31)

2140707

C.AU.x.2140707

AY857000

-^b

Australia

Kiepiela et al., 2004, (14)

5360558

C.AU.x.5360558

AY857070

- ^b

Australia

Kiepiela et al., 2004, (14)

89SM 145

C.SO.x.89SM_145

AY713415

1989

Somalia

Brown et al., 2005, (3)

90SE 364

C.SN.x.90SE_364

AY713416

1990

Sengal

Brown et al., 2005, (3)

92BR025

C.BR.92.92BR025

U52953

1992

Brazil

Gao et al., 1996, (6)

93IN101

C.IN.93.93IN101

AB023804

1993

India

Mochizuki et al., 1999, (17)

93IN904

C.IN.93.93IN904

AF067157

1993

India

Lole et al., 1999, (16)

93IN905

C.IN.93.93IN905

AF067158

1993

India

Lole et al., 1999, (16)

93IN999

C.IN.93.93IN999

AF067154

1993

India

Lole et al., 1999, (16)

94IN11246

C.IN.94.94IN11246

AF067159

1994

India

Lole et al., 1999, (16)

94IN476

C.IN.94.94IN476

AF286223

1994

India

Rodenburg et al., 2001, (27)

95IN21068

C.IN.95.95IN21068

AF067155

1995

India

Lole et al., 1999, (16)

96BW01B03

C.BW.96.96BW01B03

AF110959

1996

Botswana

Novitsky et al., 1999, (21)

96BW0502

C.BW.96.96BW0502

AF110967

1996

Botswana

Novitsky et al., 1999, (21)

96BW06

C.BW.96.96BW06

AF290028

1996

Botswana

Ndung'u et al., 2000, (18)

96BW1104

C.BW.96.96BW1104

AF110969

1996

Botswana

Novitsky et al., 1999, (21)

96BW1210

C.BW.96.96BW1210

AF110972

1996

Botswana

Novitsky et al., 1999, (21)

96BW15C02

C.BW.96.96BW15C02

AF110974

1996

Botswana

Novitsky et al., 1999, (21)

96BW16B01

C.BW.96.96BW16B01

AF110976

1996

Botswana

Novitsky et al., 1999, (21)

96BW17

C.BW.96.96BW17

AF110980

1996

Botswana

Novitsky et al., 1999, (21)

96BWM032

C.BW.96.96BWM032

AF443075

1996

Botswana

Novitsky et al., 2002, (20)

96BWMO1 5

C.BW.96.96BWMO1_5

AF443074

1996

Botswana

Novitsky et al., 2002, (20)

96ZM651

C.ZM.96.96ZM651

AF286224

1996

Zambia

Rodenburg et al., 2001, (27)

96ZM751

C.ZM.96.96ZM751

AF286225

1996

Zambia

Rodenburg et al., 2001, (27)

97TZ04

C.TZ.97.97TZ04

AF361874

1997

Tanzania

Hoelscher et al., 2001, (11)

97TZ05

C.TZ.97.97TZ05

AF361875

1997

Tanzania

Hoelscher et al., 2001, (11)

97ZA003

C.ZA.97.97ZA003

AY118165

1997

Tanzania

Gao, unpubl.^d

97ZA009

C.ZA.97.97ZA009

AY118166

1997

Tanzania

Gao, unpubl.^d

97ZA012

C.ZA.97.97ZA012

AF286227

1997

Tanzania

Rodenburg et al., 2001, (27)

98BR004

C.BR.98.98BR004

AF286228

1998

Brazil

Rodenburg et al., 2001, (27)

98BWMC122

C.BW.98.98BWMC122

AF443076

1998

Botswana

Novitsky et al., 2002, (20)

98BWMC134

C.BW.98.98BWMC134

AF443077

1998

Botswana

Novitsky et al., 2002, (20)

98BWMC14A3

C.BW.98.98BWMC14A3

AF443078

1998

Botswana

Novitsky et al., 2002, (20)

98BWMO1410

C.BW.98.98BWMO1410

AF443079

1998

Botswana

Novitsky et al., 2002, (20)

98BWMO18D5

C.BW.98.98BWMO18D5

AF443080

1998

Botswana

Novitsky et al., 2002, (20)

98BWMO36A5

C.BW.98.98BWMO36A5

AF443081

1998

Botswana

Novitsky et al., 2002, (20)

98BWMO37D5

C.BW.98.98BWMO37D5

AF443082

1998

Botswana

Novitsky et al., 2002, (20)

98IN012

C.IN.98.98IN012

AF286231

1998

India

Rodenburg et al., 2001, (27)

98IN022

C.IN.98.98IN022

AF286232

1998

India

Rodenburg et al., 2001, (27)

98IS002

C.IL.98.98IS002

AF286233

1998

Israel

Rodenburg et al., 2001, (27)

98TZ013

C.TZ.98.98TZ013

AF286234

1998

Tanzania

Rodenburg et al., 2001, (27)

98TZ017

C.TZ.98.98TZ017

AF286235

1998

Tanzania

Rodenburg et al., 2001, (27)

98ZA445

C.ZA.98.98ZA445

AY158533

1998

South Africa

Hunt et al., 2003, (12)

98ZA502

C.ZA.98.98ZA502

AY158534

1998

South Africa

Hunt et al., 2003, (12)

98ZA528

C.ZA.98.98ZA528

AY158535

1998

South Africa

Hunt et al., 2003, (12)

99BW393212

C.BW.99.99BW393212

AF443083

1999

Botswana

Novitsky et al., 2002, (20)

99BW46424

C.BW.99.99BW46424

AF443084

1999

Botswana

Novitsky et al., 2002, (20)

99BW4745

C.BW.99.99BW4745

AF443085

1999

Botswana

Novitsky et al., 2002, (20)

99BW47547

C.BW.99.99BW47547

AF443086

1999

Botswana

Novitsky et al., 2002, (20)

99BWMC168

C.BW.99.99BWMC168

AF443087

1999

Botswana

Novitsky et al., 2002, (20)

99ET1

C.IL.99.99ET1

AY255823

1999

Israel

Harris et al., 2003, (10)

99ET14

C.IL.99.99ET14

AY255825

1999

Israel

Harris et al., 2003, (10)

99ET17

C.IL.99.99ET17

AY255826

1999

Israel

Harris et al., 2003, (10)

99ET7

C.IL.99.99ET7

AY255824

1999

Israel

Harris et al., 2003, (10)

99ZACM9

C.ZA.99.99ZACM9

AF411967

1999

South Africa

Papathanasopoulos et al., 2002, (23)

99ZATM10

C.ZA.99.99ZATM10

AY228556

1999

South Africa

Papathanasopoulos et al., 2003, (24)

A125

C.TZ.01.01TZA125

AY253304

2001

Tanzania

Arroyo et al., 2004, (2)

A207

C.TZ.01.01TZA207

AY253307

2001

Tanzania

Arroyo et al., 2004, (2)

A246

C.TZ.01.01TZA246

AY253308

2001

Tanzania

Arroyo et al., 2004, (2)

A260

C.TZ.01.01TZA260

AY253310

2001

Tanzania

Arroyo et al., 2004, (2)

A301

C.TZ.01.01TZA301

AY253312

2001

Tanzania

Arroyo et al., 2004, (2)

A388

C.TZ.01.01TZA388

AY253317

2001

Tanzania

Arroyo et al., 2004, (2)

A93

C.TZ.01.01TZA93

AY253303

2001

Tanzania

Arroyo et al., 2004, (2)

ARG4006

C.AR.01.ARG4006

AY563170

2001

Argentina

Carrion et al., 2004, (4)

BD16 10

C.TZ.01.01TZBD16_10

AY253320

2001

Tanzania

Arroyo et al., 2004, (2)

BD22 11

C.TZ.01.01TZBD22_11

AY253321

2001

Tanzania

Arroyo et al., 2004, (2)

BD39 8

C.TZ.01.01TZBD39_8

AY253313

2001

Tanzania

Arroyo et al., 2004, (2)

BD9 11

C.TZ.01.01TZBD9_11

AY253322

2001

Tanzania

Arroyo et al., 2004, (2)

CTSC2

C.ZA.99.CTSC2

AY043176

1999

South Africa

von Harmelen et al., 2001, (33)

HIV1084i

C.ZM.x.HIV1084i

AY805330

-^b

Zambia

Grisson et al., 2004, (9)

DU151

C.ZA.99.DU151

AY043173

1999

South Africa

von Harmelen et al., 2001, (33)

DU179

C.ZA.99.DU179

AY043174

1999

South Africa

von Harmelen et al., 2001, (33)

DU422

C.ZA.99.DU422

AY043175

1999

South Africa

von Harmelen et al., 2001, (33)

ETH2220

C.ET.86.ETH2220

U46016

1986

Ethiopia

Salminen et al., 1996, (30)

KER2010

C.KE.00.KER2010

AF457054

2000

Kenya

Dowling et al., 2002, (5)

mIDU101 3

C.MM.99.mIDU101_3

AB097871

1999

Myanmar

Takebe et al., unpubl.^e

TRA3011

C.UY.01.TRA3011

AY563169

2001

Uruguay

Carrion et al., 2004, (4)

TV001

C.ZA.98.TV001

AY162223

1998

South Africa

zur Megede et al., 2002, (34)

TV002

C.ZA.98.TV002

AY162224

1998

South Africa

zur Megede et al., 2002, (34)

TV012

C.ZA.98.TV012

AY162225

1998

South Africa

zur Megede et al., 2002, (34)

ZASW7

C.ZA.99.ZASW7

AF411966

1999

South Africa

Papathanasopoulos et al., 2002, (23)

1069MB

C.ZA.1069MB

AY585268, AY838567

CM

2000

South Africa

Rousseau et al., 2006, (28)

1119MB

C.ZA.1119MB

AY463229

CM

2000

South Africa

Rousseau et al., 2006, (28)

1134MB

C.ZA.1134MB

AY463217

CM

2000

South Africa

Rousseau et al., 2006, (28)

1157M3M

C.ZA.1157M3M

AY585266

CM

2000

South Africa

Rousseau et al., 2006, (28)

1162MB

C.ZA.1162MB

AY463224

CM

2000

South Africa

Rousseau et al., 2006, (28)

1165MB

C.ZA.1165MB

AY463230

CM

2000

South Africa

Rousseau et al., 2006, (28)

1168MB

C.ZA.1168MB

AY463231

CM

2000

South Africa

Rousseau et al., 2006, (28)

1170MB

C.ZA.1170MB

AY463225

CM

2000

South Africa

Rousseau et al., 2006, (28)

1171MB

C.ZA.1171MB

AY463232

CM

2000

South Africa

Rousseau et al., 2006, (28)

1176MB

C.ZA.1176MB

AY463218

CM

2000

South Africa

Rousseau et al., 2006, (28)

1178MB

C.ZA.1178MB

AY463233

CM

2000

South Africa

Rousseau et al., 2006, (28)

1184MB

C.ZA.1184MB

AY585267, AY838566

CM

2000

South Africa

Rousseau et al., 2006, (28)

1189MB

C.ZA.1189MB

AY585264, AY838565

CM

2000

South Africa

Rousseau et al., 2006, (28)

1192M3M

C.ZA.1192M3M

AY463219

CM

2000

South Africa

Rousseau et al., 2006, (28)

1195MB

C.ZA.1195MB

AY463220

CM

2000

South Africa

Rousseau et al., 2006, (28)

1197MB

C.ZA.1197MB

AY463234

CM

2000

South Africa

Rousseau et al., 2006, (28)

1210MB

C.ZA.1210MB

AY463221

CM

2000

South Africa

Rousseau et al., 2006, (28)

1214MB

C.ZA.1214MB

AY463236

CM

2000

South Africa

Rousseau et al., 2006, (28)

1217MB

C.ZA.1217MB

AY463226

CM

2000

South Africa

Rousseau et al., 2006, (28)

1225MB

C.ZA.1225MB

AY463227

CM

2000

South Africa

Rousseau et al., 2006, (28)

1228MB

C.ZA.1228MB

AY463222

CM

2000

South Africa

Rousseau et al., 2006, (28)

2134MB

C.ZA.2134MB

AY463237

CM

2001

South Africa

Rousseau et al., 2006, (28)

J112MA

C.ZA.J112MA

AY585265, AY838568

J

2000

South Africa

Rousseau et al., 2006, (28)

J38MA

C.ZA.J38MA

AY463228

J

2000

South Africa

Rousseau et al., 2006, (28)

J54Ma

C.ZA.J54Ma

AY463223

J

2001

South Africa

Rousseau et al., 2006, (28)

PS077

03ZAPS077B1

DQ093591

PS

2003

South Africa

Rousseau et al., 2006, (28)

PS079

03ZAPS079B1

DQ093592

PS

2003

South Africa

Rousseau et al., 2006, (28)

PS160

04ZAPS160B1

DQ164107

PS

2004

South Africa

Rousseau et al., 2006, (28)

PS161

04ZAPS161B1

DQ164115

PS

2004

South Africa

Rousseau et al., 2006, (28)

PS168

04ZAPS168B1

DQ164121

PS

2004

South Africa

Rousseau et al., 2006, (28)

PS170

04ZAPS170B1

DQ164116

PS

2004

South Africa

Rousseau et al., 2006, (28)

PS188

04ZAPS188B1

DQ164122

PS

2004

South Africa

Rousseau et al., 2006, (28)

PS189

04ZAPS189B1

DQ164117

PS

2004

South Africa

Rousseau et al., 2006, (28)

PS190

04ZAPS190B1

DQ093602

PS

2004

South Africa

Rousseau et al., 2006, (28)

PS193

04ZAPS193B1

DQ164109

PS

2004

South Africa

Rousseau et al., 2006, (28)

PS195

04ZAPS195B1

DQ164118

PS

2004