| HIV-1 env sequences used for phylogenetic reconstruction | ||||||
| Sequence name | Accession number | Sequence name | Accession number | Sequence name | Accession number | |
| Subtype D: | HIVELICG | K03454 | HIVNDK | M27323 | HIVZ2Z6 | M22639 |
| Subtype B: | 87USSG3X | L02317 | CNRL42CG | U71182 | HIVNY5CG | M38431 |
| 88USWR27 | U26546 | D31 | U43096 | HIVOYI | M26727 | |
| 89SP061 | AJ006287 | HIVBH102 | M15654 | HIVPV22 | K02083 | |
| AUC18 | AF042102 | HIVCAM1 | D10112 | HIVRF | M17451 | |
| AUC18MBC | U37270 | HIVF12CG | Z11530 | HIVSF2CG | K02007 | |
| AUMBC200 | AF042100 | HIVHAN2 | U43141 | HIVWEAU160 | U21135 | |
| AUMBC925 | AF042101 | HIVJC16 | AF049494 | HIVYU10X | M93259 | |
| AUMBCC18B | AF042106 | HIVJRCSF | M38429 | HIVYU2X | M93258 | |
| AUMBCC54 | AF042103 | HIVJRFL | U63632 | MANC | U23487 | |
| AUMBCC98 | AF042104 | HIVLAICG | K02013 | NLACH320A | U34603 | |
| AUMBCD36 | AF042105 | HIVMCK1 | D86068 | NLACH320B | U34604 | |
| USAD8 | U19647 | HIVMN | M17449 | US89.6 | U39362 | |
| USDH123 | AF069140 | HIVNL43 | M19921 | |||